Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.1e-61 238.8 116 100.0
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 2.8e-50 201.8 113 87.6
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 2.8e-50 201.8 113 87.6
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 6.3e-50 200.7 113 84.1
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-49 199.9 113 86.7
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 3.4e-48 194.9 115 80.9
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 1.0e-47 193.4 116 79.3
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-47 193.0 113 81.4
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.3e-47 193.0 113 81.4
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-47 192.6 113 80.5
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.7e-47 192.6 113 80.5
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 4.2e-46 188.0 113 84.1
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 6.1e-45 184.1 113 82.3
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 2.8e-42 175.3 118 71.2
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.1e-41 171.8 116 71.6
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 4.5e-40 167.9 116 69.8
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 4.2e-30 134.8 118 59.3
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 6.1e-29 131.0 120 61.7
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.1e-21 105.9 114 56.1
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 1.0e-20 103.6 114 53.5
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 6.8e-20 100.9 117 50.4
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 2.6e-19 99.0 114 51.8
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.4e-19 98.6 114 47.4
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 5.7e-19 97.8 114 51.8
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 5.7e-19 97.8 114 49.1
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 9.7e-19 97.1 114 51.8
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.2e-18 95.9 116 47.4
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 3.7e-18 95.1 110 47.3
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 3.7e-18 95.1 114 50.0
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 3.7e-18 95.1 114 50.0
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 4.8e-18 94.7 114 50.0
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.2e-16 90.1 117 47.0
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.2e-15 85.9 115 47.8
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.5e-14 83.2 89 49.4
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.5e-14 83.2 88 51.1
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.9e-14 82.8 88 48.9
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.2e-14 82.0 89 55.1
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 3.2e-14 82.0 82 59.8
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 7.2e-14 80.9 94 51.1
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 2.1e-13 79.3 90 50.0
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.1e-13 79.3 96 44.8
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 6.1e-13 77.8 81 50.6
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.4e-12 76.6 73 50.7
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.4e-12 76.6 90 46.7
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.4e-12 76.6 117 42.7
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.3e-12 75.9 83 48.2
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.3e-12 75.9 89 51.7
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 4.0e-12 75.1 116 45.7
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 5.2e-12 74.7 84 51.2
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 6.8e-12 74.3 110 42.7
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 8.8e-12 73.9 89 50.6
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 1.2e-11 73.6 65 60.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.2e-11 73.6 92 50.0
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.2e-11 73.6 89 47.2
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.5e-11 73.2 93 52.7
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 1.5e-11 73.2 94 47.9
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.6e-11 72.4 97 45.4
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.6e-11 72.4 88 47.7
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 4.4e-11 71.6 92 45.7
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 7.5e-11 70.9 93 51.6
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 7.5e-11 70.9 89 44.9
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 9.8e-11 70.5 84 48.8
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.3e-10 70.1 82 43.9
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.3e-10 70.1 93 47.3
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 1.3e-10 70.1 104 38.5
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.2e-10 69.3 93 50.5
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.2e-10 69.3 84 48.8
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.8e-10 68.9 75 53.3
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 4.8e-10 68.2 103 44.7
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 4.8e-10 68.2 90 50.0
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 4.8e-10 68.2 87 43.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 6.3e-10 67.8 98 42.9
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.1e-09 67.0 93 45.2
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 1.8e-09 66.2 95 41.1
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 5.4e-09 64.7 94 44.7
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 5.4e-09 64.7 84 47.6
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 7.0e-09 64.3 60 56.7
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 7.0e-09 64.3 90 42.2
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 9.1e-09 63.9 76 51.3
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 1.6e-08 63.2 85 43.5
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.0e-08 62.8 100 42.0
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 3.5e-08 62.0 94 44.7
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 3.5e-08 62.0 93 41.9
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 7.7e-08 60.8 93 40.9
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 7.7e-08 60.8 89 43.8
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 1.0e-07 60.5 89 41.6
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 1.3e-07 60.1 93 39.8
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 1.7e-07 59.7 90 43.3
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 2.9e-07 58.9 63 46.0
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.9e-07 58.9 100 37.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 2.9e-07 58.9 98 40.8
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 2.9e-07 58.9 100 46.0
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 8.6e-07 57.4 63 42.9
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.1e-06 57.0 89 41.6
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 1.1e-06 57.0 76 46.1
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.1e-06 57.0 92 44.6
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.5e-06 56.6 93 39.8
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.5e-06 55.8 89 42.7
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 4.2e-06 55.1 90 38.9
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 7.2e-06 54.3 65 47.7


User provided reference genes

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