Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 5.4e-92 340.9 161 100.0
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 2.7e-91 338.6 161 99.4
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 3.5e-91 338.2 161 98.8
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 1.0e-90 336.7 161 98.8
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 1.0e-90 336.7 161 98.8
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 3.0e-90 335.1 161 97.5
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 3.9e-90 334.7 161 96.9
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 6.6e-90 334.0 161 97.5
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 2.5e-89 332.0 161 96.3
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 1.2e-88 329.7 169 93.5
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 6.2e-88 327.4 167 93.4
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 6.2e-88 327.4 161 94.4
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 5.2e-87 324.3 161 94.4
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 2.2e-77 292.4 161 82.0
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 4.1e-76 288.1 162 82.1
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 1.2e-75 286.6 161 78.9
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.0e-74 283.5 161 77.6
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 2.3e-74 282.3 161 77.0
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 2.3e-74 282.3 162 80.2
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 2.3e-74 282.3 161 77.6
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 2.3e-74 282.3 161 77.6
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.9e-74 281.6 162 80.2
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 3.9e-74 281.6 160 76.2
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 8.6e-74 280.4 161 75.8
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 8.6e-74 280.4 161 76.4
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 1.1e-73 280.0 156 80.8
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 1.5e-73 279.6 161 76.4
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 1.9e-73 279.3 159 77.4
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 2.5e-73 278.9 154 78.6
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 4.3e-73 278.1 148 84.5
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 4.3e-73 278.1 161 74.5
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 5.6e-73 277.7 158 77.2
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 5.6e-73 277.7 161 76.4
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 7.3e-73 277.3 161 77.6
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 9.5e-73 276.9 159 78.0
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 9.5e-73 276.9 159 78.0
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 1.6e-72 276.2 161 76.4
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.6e-72 275.0 159 77.4
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 3.6e-72 275.0 159 74.8
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 4.7e-72 274.6 158 75.9
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 8.1e-72 273.9 158 75.9
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 8.1e-72 273.9 159 74.2
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 1.1e-71 273.5 158 74.1
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 1.1e-71 273.5 161 73.9
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.4e-71 273.1 158 75.3
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 1.4e-71 273.1 161 75.8
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.4e-71 273.1 161 77.0
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 1.8e-71 272.7 161 74.5
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 1.8e-71 272.7 158 75.3
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 2.4e-71 272.3 158 75.3
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 2.4e-71 272.3 160 74.4
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 2.4e-71 272.3 161 75.2
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 4.0e-71 271.6 160 75.0
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 5.2e-71 271.2 158 77.2
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 5.2e-71 271.2 158 77.2
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 5.2e-71 271.2 158 77.2
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 5.2e-71 271.2 161 75.8
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 6.8e-71 270.8 152 78.3
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 8.9e-71 270.4 154 76.6
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 8.9e-71 270.4 161 75.2
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 8.9e-71 270.4 161 75.2
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 8.9e-71 270.4 162 76.5
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 1.2e-70 270.0 161 74.5
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.2e-70 270.0 158 75.9
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 2.0e-70 269.2 161 73.9
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 2.0e-70 269.2 155 76.1
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 2.6e-70 268.9 154 76.6
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 2.6e-70 268.9 161 73.9
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 3.4e-70 268.5 161 73.9
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 4.4e-70 268.1 161 72.7
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 9.9e-70 266.9 161 75.2
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 1.7e-69 266.2 162 73.5
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.8e-69 265.0 152 78.3
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 8.4e-69 263.8 161 70.8
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 8.4e-69 263.8 161 72.7
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 8.4e-69 263.8 157 73.2
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.1e-68 263.5 161 72.7
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.4e-68 263.1 158 73.4
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.9e-68 262.7 161 72.7
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 1.9e-68 262.7 161 73.9
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 5.4e-68 261.2 152 74.3
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.2e-67 260.0 161 68.3
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 2.7e-67 258.8 161 67.7
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 2.7e-67 258.8 160 73.8
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 7.8e-67 257.3 155 72.3
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 1.3e-66 256.5 158 71.5
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 1.7e-66 256.1 162 70.4
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 3.3e-65 251.9 155 70.3
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.2e-64 250.0 161 72.7
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 2.1e-64 249.2 214 54.2
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 4.7e-64 248.1 161 71.4
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 4.7e-64 248.1 162 67.9
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 6.2e-64 247.7 148 77.0
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 1.1e-63 246.9 149 71.8
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 4.0e-63 245.0 156 69.2
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 1.7e-61 239.6 135 78.5
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 2.9e-61 238.8 138 76.8
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 5.4e-60 234.6 155 66.5
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 1.2e-59 233.4 135 75.6
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 2.7e-59 232.3 135 73.3
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 1.7e-58 229.6 138 71.7
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 8.7e-58 227.3 138 74.6
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 1.4e-55 219.9 151 68.9
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 1.2e-54 216.9 117 82.1
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 1.4e-52 209.9 121 74.4
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 3.5e-51 205.3 183 57.4
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.0e-50 203.8 141 61.7
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 1.8e-50 203.0 153 58.8
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 3.9e-50 201.8 157 70.7
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 5.1e-50 201.4 140 64.3
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.1e-49 200.3 116 76.7
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 1.9e-49 199.5 114 76.3
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 7.4e-49 197.6 141 60.3
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 4.8e-48 194.9 115 75.7
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 4.0e-47 191.8 160 60.0
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 2.0e-46 189.5 114 72.8
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 2.6e-46 189.1 105 78.1
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.9e-44 183.0 137 60.6
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 1.2e-43 180.3 96 80.2
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 2.1e-43 179.5 95 82.1
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 6.2e-40 167.9 100 73.0
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.9e-36 156.4 132 56.8
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 1.2e-35 153.7 85 83.5
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 5.1e-34 148.3 135 55.6
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 2.8e-32 142.5 86 75.6
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 4.6e-27 125.2 73 78.1
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 8.2e-24 114.4 60 91.7
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 7.9e-19 97.8 52 76.9
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 1.1e-15 87.4 71 64.8


User provided reference genes

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