Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36062 Brassica carinata HOM05D002137 ORTHO05D002144 1.7e-42 175.6 92 100.0
BcaC05g25683 Brassica carinata HOM05D002137 ORTHO05D002144 2.2e-21 105.5 62 90.3
C05p16010 Brassica napus HOM05D002137 ORTHO05D002144 2.2e-21 105.5 62 90.3
BolC5t30303H Brassica oleracea HOM05D002137 ORTHO05D002144 2.2e-21 105.5 62 90.3
A06p13520 Brassica napus HOM05D002137 ORTHO05D002144 2.8e-21 105.1 62 88.7
BraA06t24504Z Brassica rapa HOM05D002137 ORTHO05D002144 2.8e-21 105.1 62 88.7
BcaB07g34019 Brassica carinata HOM05D002137 ORTHO05D002144 6.3e-21 104.0 62 87.1
BraA08t35012Z Brassica rapa HOM05D002137 ORTHO05D002144 4.5e-19 97.8 62 80.6
Carub.0001s1736 Capsella rubella HOM05D002137 ORTHO05D002144 5.9e-19 97.4 62 79.0
BcaB03g12990 Brassica carinata HOM05D002137 ORTHO05D002144 7.7e-19 97.1 62 79.0
BcaC07g38874 Brassica carinata HOM05D002137 ORTHO05D002144 1.3e-18 96.3 62 79.0
A08p30810 Brassica napus HOM05D002137 ORTHO05D002144 1.7e-18 95.9 62 79.0
C08p18110 Brassica napus HOM05D002137 ORTHO05D002144 3.8e-18 94.7 62 77.4
BolC8t49445H Brassica oleracea HOM05D002137 ORTHO05D002144 3.8e-18 94.7 62 77.4
CARHR018230 Cardamine hirsuta HOM05D002137 ORTHO05D002144 1.5e-17 92.8 62 79.0
AT1G17620 Arabidopsis thaliana HOM05D002137 ORTHO05D002144 1.9e-17 92.4 62 77.4
AL1G29950 Arabidopsis lyrata HOM05D002137 ORTHO05D002144 2.5e-17 92.0 62 79.0
Sp1g15730 Schrenkiella parvula HOM05D002137 ORTHO05D002144 2.5e-17 92.0 62 79.0
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 2.8e-16 88.6 62 74.2
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.7e-13 78.2 61 65.6
THA.LOC104813947 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.7e-13 78.2 61 63.9
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 1.6e-11 72.8 61 62.3
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 1.6e-11 72.8 61 63.9
Gohir.A10G058400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 2.0e-11 72.4 63 63.5
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.5e-11 71.2 61 62.3
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.5e-11 71.2 61 62.3
Gohir.D10G060200 Gossypium hirsutum HOM05D002137 ORTHO05D002144 5.9e-11 70.9 62 64.5
Gorai.011G064400 Gossypium raimondii HOM05D002137 ORTHO05D002144 5.9e-11 70.9 62 64.5
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 1.3e-10 69.7 62 61.3
Gorai.009G141800 Gossypium raimondii HOM05D002137 ORTHO05D002144 1.7e-10 69.3 61 60.7
Gohir.A06G190900 Gossypium hirsutum HOM05D002137 ORTHO05D002144 8.6e-10 67.0 61 57.4
Lj3g0022281 Lotus japonicus HOM05D002137 ORTHO05D002144 8.6e-10 67.0 62 56.5
Gorai.010G232300 Gossypium raimondii HOM05D002137 ORTHO05D002144 1.1e-09 66.6 91 48.4
Potri.003G039400 Populus trichocarpa HOM05D002137 ORTHO05D002144 1.9e-09 65.9 61 57.4
Solyc03g121620.1 Solanum lycopersicum HOM05D002137 ORTHO05D002144 1.9e-09 65.9 62 54.8
Sopen03g040430 Solanum pennellii HOM05D002137 ORTHO05D002144 1.9e-09 65.9 62 54.8
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 3.3e-09 65.1 62 58.1
Sed0014294 Sechium edule HOM05D002137 ORTHO05D002144 3.3e-09 65.1 61 60.7
Cfa003583 Carpinus fangiana HOM05D002137 ORTHO05D002144 4.3e-09 64.7 62 58.1
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 4.3e-09 64.7 61 57.4
ClCG07G013740 Citrullus lanatus HOM05D002137 ORTHO05D002144 5.6e-09 64.3 61 57.4
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 5.6e-09 64.3 61 55.7
Duzib160G0633 Durio zibethinus HOM05D002137 ORTHO05D002144 7.3e-09 63.9 60 55.0
Gohir.D06G199300 Gossypium hirsutum HOM05D002137 ORTHO05D002144 9.5e-09 63.5 61 55.7
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 9.5e-09 63.5 61 57.4
PGSC0003DMG400002586 Solanum tuberosum HOM05D002137 ORTHO05D002144 9.5e-09 63.5 62 53.2
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 1.2e-08 63.2 61 54.1
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.6e-08 62.8 62 53.2
CiPaw.01G224800 Carya illinoinensis HOM05D002137 ORTHO05D002144 1.6e-08 62.8 62 58.1
COL.COLO4_30678 Corchorus olitorius HOM05D002137 ORTHO05D002144 2.8e-08 62.0 61 55.7
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 2.8e-08 62.0 61 55.7
TPR.G6537 Trifolium pratense HOM05D002137 ORTHO05D002144 2.8e-08 62.0 62 54.8
Sabra03G0024200 Salix brachista HOM05D002137 ORTHO05D002144 3.6e-08 61.6 61 54.1
Duzib235G1395 Durio zibethinus HOM05D002137 ORTHO05D002144 4.7e-08 61.2 61 59.0
Glyma.15G024400 Glycine max HOM05D002137 ORTHO05D002144 4.7e-08 61.2 62 51.6
Peaxi162Scf00038g00154 Petunia axillaris HOM05D002137 ORTHO05D002144 4.7e-08 61.2 61 57.4
Glyma.13G349900 Glycine max HOM05D002137 ORTHO05D002144 6.1e-08 60.8 62 51.6
Nn8g38851 Nelumbo nucifera HOM05D002137 ORTHO05D002144 6.1e-08 60.8 62 56.5
PGR102G0962 Punica granatum HOM05D002137 ORTHO05D002144 6.1e-08 60.8 62 53.2
MD09G1193000 Malus domestica HOM05D002137 ORTHO05D002144 8.0e-08 60.5 62 50.0
Nitab4.5_0010788g0030 Nicotiana tabacum HOM05D002137 ORTHO05D002144 8.0e-08 60.5 61 50.8
Eucgr.J02856 Eucalyptus grandis HOM05D002137 ORTHO05D002144 1.0e-07 60.1 62 51.6
Nitab4.5_0001295g0090 Nicotiana tabacum HOM05D002137 ORTHO05D002144 1.0e-07 60.1 61 50.8
QL05p012469 Quercus lobata HOM05D002137 ORTHO05D002144 1.0e-07 60.1 62 53.2
Thecc.06G113200 Theobroma cacao HOM05D002137 ORTHO05D002144 1.0e-07 60.1 61 59.0
Manes.04G139900 Manihot esculenta HOM05D002137 ORTHO05D002144 1.4e-07 59.7 61 50.8
Eucgr.F03133 Eucalyptus grandis HOM05D002137 ORTHO05D002144 1.8e-07 59.3 63 52.4
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 2.3e-07 58.9 61 52.5
arahy.Tifrunner.gnm1.ann1.RD29P1 Arachis hypogaea HOM05D002137 ORTHO05D002144 3.0e-07 58.5 62 50.0
CsaV3_7G034780 Cucumis sativus L. HOM05D002137 ORTHO05D002144 3.0e-07 58.5 63 42.9
ClCG09G000700 Citrullus lanatus HOM05D002137 ORTHO05D002144 4.0e-07 58.2 63 46.0
Hma1.2p1_0388F.1_g142370 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 4.0e-07 58.2 61 50.8
Potri.001G200700 Populus trichocarpa HOM05D002137 ORTHO05D002144 4.0e-07 58.2 61 52.5
VMungo1080G1841 Vigna mungo HOM05D002137 ORTHO05D002144 4.0e-07 58.2 62 50.0
MELO3C024389.2 Cucumis melo HOM05D002137 ORTHO05D002144 5.2e-07 57.8 63 44.4
Phvul.005G159100 Phaseolus vulgaris HOM05D002137 ORTHO05D002144 5.2e-07 57.8 62 46.8
Psat5g273120 Pisum sativum HOM05D002137 ORTHO05D002144 5.2e-07 57.8 62 51.6
Lsat_1_v5_gn_0_11181 Lactuca sativa HOM05D002137 ORTHO05D002144 8.9e-07 57.0 62 53.2
Psat5g290120 Pisum sativum HOM05D002137 ORTHO05D002144 8.9e-07 57.0 62 50.0
Prupe.3G049400 Prunus persica HOM05D002137 ORTHO05D002144 8.9e-07 57.0 62 48.4
Psat0s734g0080 Pisum sativum HOM05D002137 ORTHO05D002144 1.2e-06 56.6 62 50.0
Sabra01G0157200 Salix brachista HOM05D002137 ORTHO05D002144 1.2e-06 56.6 61 50.8
TWI79G1297 Tripterygium wilfordii HOM05D002137 ORTHO05D002144 1.2e-06 56.6 62 54.8
Ciclev10009246m.g Citrus clementina HOM05D002137 ORTHO05D002144 2.0e-06 55.8 62 53.2
Cpa.g.sc131.54 Carica papaya HOM05D002137 ORTHO05D002144 3.4e-06 55.1 62 53.2
Dinv37912 Davidia involucrata HOM05D002137 ORTHO05D002144 3.4e-06 55.1 61 49.2
TAR626G1375 Trochodendron aralioides HOM05D002137 ORTHO05D002144 4.4e-06 54.7 61 49.2
Haze_18177 Corylus avellana HOM05D002137 ORTHO05D002144 5.7e-06 54.3 62 48.4
Haze_18184 Corylus avellana HOM05D002137 ORTHO05D002144 5.7e-06 54.3 62 48.4
FvH4_6g33440 Fragaria vesca HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 46.0
FAN02G3113 Fragaria x ananassa HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 46.0
FAN05G5160 Fragaria x ananassa HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 46.0
FAN09G1325 Fragaria x ananassa HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 46.0
FAN14G1585 Fragaria x ananassa HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 46.0
Lj5C44T23 Lonicera japonica HOM05D002137 ORTHO05D002144 5.7e-06 54.3 61 49.2
RcHm_v2.0_Chr2g0143331 Rosa chinensis HOM05D002137 ORTHO05D002144 5.7e-06 54.3 63 47.6
Dinv30376 Davidia involucrata HOM05D002137 ORTHO05D002144 7.5e-06 53.9 61 49.2
Manes.16G081000 Manihot esculenta HOM05D002137 ORTHO05D002144 7.5e-06 53.9 66 51.5
ECA232G0334 Erigeron canadensis HOM05D002137 ORTHO05D002144 9.8e-06 53.5 62 48.4


User provided reference genes

Program Settings