Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36061 Brassica carinata HOM05D000115 ORTHO05D092644 1.2e-106 389.8 187 100.0
BcaNung01902 Brassica carinata HOM05D000115 ORTHO05D006733 2.5e-48 196.1 181 60.2
Thhalv10012994m.g Eutrema salsugineum HOM05D000115 ORTHO05D014770 1.5e-45 186.8 178 59.6
Sp6g32590 Schrenkiella parvula HOM05D000115 ORTHO05D014770 1.4e-43 180.3 178 58.4
AL6G21460 Arabidopsis lyrata HOM05D000115 ORTHO05D014770 4.1e-43 178.7 178 56.2
AT5G10900 Arabidopsis thaliana HOM05D000115 ORTHO05D014770 4.1e-43 178.7 178 56.2
A02p00740 Brassica napus HOM05D000115 ORTHO05D014770 5.4e-43 178.3 176 57.4
BraA02t05059Z Brassica rapa HOM05D000115 ORTHO05D014770 5.4e-43 178.3 176 57.4
A08p08980 Brassica napus HOM05D000115 ORTHO05D016020 1.2e-42 177.2 150 65.3
BcaC03g13339 Brassica carinata HOM05D000115 ORTHO05D014770 3.5e-42 175.6 176 57.4
A02p16120 Brassica napus HOM05D000115 ORTHO05D016020 4.5e-42 175.3 150 64.7
A06p21070 Brassica napus HOM05D000115 ORTHO05D016020 4.5e-42 175.3 150 64.7
A03p15440 Brassica napus HOM05D000115 ORTHO05D016020 1.3e-41 173.7 150 64.7
Carub.0006s0939 Capsella rubella HOM05D000115 ORTHO05D014770 1.7e-41 173.3 178 54.5
BolC2t06433H Brassica oleracea HOM05D000115 ORTHO05D014770 2.3e-41 172.9 176 56.8
C02p04740 Brassica napus HOM05D000115 ORTHO05D014770 3.8e-41 172.2 176 56.8
Aa31LG3G16220 Aethionema arabicum HOM05D000115 ORTHO05D014770 8.6e-41 171.0 177 54.8
A05p25070 Brassica napus HOM05D000115 ORTHO05D016020 1.5e-40 170.2 181 55.2
BraA08t32898Z Brassica rapa HOM05D000115 ORTHO05D016020 7.2e-40 167.9 150 62.7
BraA10t43690Z Brassica rapa HOM05D000115 ORTHO05D016020 7.2e-40 167.9 148 64.2
BraA03t10834Z Brassica rapa HOM05D000115 ORTHO05D016020 9.5e-40 167.5 150 62.7
BraA03t10839Z Brassica rapa HOM05D000115 ORTHO05D016020 9.5e-40 167.5 150 62.7
BraA05t21389Z Brassica rapa HOM05D000115 ORTHO05D016020 1.4e-38 163.7 181 53.6
BcaB03g14135 Brassica carinata HOM05D000115 ORTHO05D016020 3.0e-38 162.5 121 69.4
THA.LOC104814989 Tarenaya hassleriana HOM05D000115 ORTHO05D014770 5.2e-38 161.8 177 50.8
CARHR202390 Cardamine hirsuta HOM05D000115 ORTHO05D014770 3.6e-31 139.0 122 63.1
C04p61710 Brassica napus HOM05D000115 ORTHO05D102492 3.9e-25 119.0 67 82.1
FvH4_6g33720 Fragaria vesca HOM05D000115 ORTHO05D003511 2.2e-20 103.2 181 38.7
RcHm_v2.0_Chr2g0143611 Rosa chinensis HOM05D000115 ORTHO05D003511 3.7e-20 102.4 181 38.7
FAN02G0337 Fragaria x ananassa HOM05D000115 ORTHO05D003511 4.9e-20 102.1 181 38.1
FAN05G4063 Fragaria x ananassa HOM05D000115 ORTHO05D003511 4.9e-20 102.1 181 38.1
FAN09G3652 Fragaria x ananassa HOM05D000115 ORTHO05D003511 4.9e-20 102.1 181 38.1
CANSAT56G4126 Cannabis sativa HOM05D000115 ORTHO05D003511 1.6e-18 97.1 183 36.1
MD09G1191500 Malus domestica HOM05D000115 ORTHO05D003511 1.6e-18 97.1 183 36.6
Lj3g0016356 Lotus japonicus HOM05D000115 ORTHO05D003511 7.8e-18 94.7 184 34.8
Psat5g291480 Pisum sativum HOM05D000115 ORTHO05D003511 3.0e-17 92.8 186 34.4
Prupe.3G047600 Prunus persica HOM05D000115 ORTHO05D003511 3.0e-17 92.8 183 36.1
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 3.0e-17 92.8 181 36.5
QL05p010459 Quercus lobata HOM05D000115 ORTHO05D003511 3.9e-17 92.4 187 36.4
FAN14G4475 Fragaria x ananassa HOM05D000115 ORTHO05D003511 1.9e-16 90.1 127 44.1
Ca_01214_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 2.5e-16 89.7 186 33.3
Medtr2g099710 Medicago truncatula HOM05D000115 ORTHO05D003511 2.5e-16 89.7 163 36.2
Glyma.13G348300 Glycine max HOM05D000115 ORTHO05D003511 1.2e-15 87.4 185 36.8
CiPaw.02G139100 Carya illinoinensis HOM05D000115 ORTHO05D003511 1.6e-15 87.0 185 35.7
CANSAT56G1622 Cannabis sativa HOM05D000115 ORTHO05D003511 8.1e-15 84.7 182 33.0
VMungo1080G1576 Vigna mungo HOM05D000115 ORTHO05D003511 1.1e-14 84.3 185 35.7
Atru.chr3.62 Acer truncatum HOM05D000115 ORTHO05D003511 1.4e-14 84.0 194 32.0
arahy.Tifrunner.gnm1.ann1.FAWA0L Arachis hypogaea HOM05D000115 ORTHO05D003511 1.8e-14 83.6 185 30.8
arahy.Tifrunner.gnm1.ann1.G5TW2N Arachis hypogaea HOM05D000115 ORTHO05D003511 1.8e-14 83.6 185 30.8
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 1.8e-14 83.6 187 31.6
Rhsim12G0012700 Rhododendron simsii HOM05D000115 ORTHO05D003511 5.2e-14 82.0 188 31.4
Gohir.A07G172400 Gossypium hirsutum HOM05D000115 ORTHO05D003511 6.8e-14 81.6 194 33.0
BcaNung04638 Brassica carinata HOM05D000115 ORTHO05D003511 1.5e-13 80.5 193 32.6
Gohir.D07G179200 Gossypium hirsutum HOM05D000115 ORTHO05D003511 3.4e-13 79.3 194 32.0
Gorai.001G200300 Gossypium raimondii HOM05D000115 ORTHO05D003511 3.4e-13 79.3 194 32.0
Actinidia22860 Actinidia chinensis HOM05D000115 ORTHO05D003511 7.6e-13 78.2 192 32.3
BcaC04g23350 Brassica carinata HOM05D000115 ORTHO05D003511 7.6e-13 78.2 193 31.6
BolC9t53866H Brassica oleracea HOM05D000115 ORTHO05D003511 7.6e-13 78.2 193 31.6
Ca_22445_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 7.6e-13 78.2 192 32.3
Ciclev10025179m.g Citrus clementina HOM05D000115 ORTHO05D003511 9.9e-13 77.8 188 33.0
CAN.G809.3 Capsicum annuum HOM05D000115 ORTHO05D003511 1.3e-12 77.4 194 32.5
DCAR_014123 Daucus carota HOM05D000115 ORTHO05D003511 1.3e-12 77.4 191 32.5
Eucgr.J02567 Eucalyptus grandis HOM05D000115 ORTHO05D003511 1.3e-12 77.4 192 32.3
Solyc02g082230.4 Solanum lycopersicum HOM05D000115 ORTHO05D003511 1.3e-12 77.4 194 32.0
Sopen02g026890 Solanum pennellii HOM05D000115 ORTHO05D003511 1.3e-12 77.4 194 32.0
A09p08440 Brassica napus HOM05D000115 ORTHO05D003511 1.7e-12 77.0 193 31.1
C09p09550 Brassica napus HOM05D000115 ORTHO05D003511 1.7e-12 77.0 193 31.1
Rhsim10G0191000 Rhododendron simsii HOM05D000115 ORTHO05D003511 1.7e-12 77.0 192 30.7
ATR0605G387 Amborella trichopoda HOM05D000115 ORTHO05D003511 2.2e-12 76.6 194 30.4
BraA09t36494Z Brassica rapa HOM05D000115 ORTHO05D003511 2.2e-12 76.6 193 31.1
FAN23G1295 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.2e-12 76.6 198 33.3
PGSC0003DMG400013661 Solanum tuberosum HOM05D000115 ORTHO05D003511 2.2e-12 76.6 194 32.5
CSS0040979 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D003511 2.9e-12 76.3 192 31.8
CSS0043751 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D003511 2.9e-12 76.3 192 31.8
Duzib147G0660 Durio zibethinus HOM05D000115 ORTHO05D003511 3.7e-12 75.9 194 31.4
FvH4_1g09940 Fragaria vesca HOM05D000115 ORTHO05D003511 3.7e-12 75.9 198 32.8
FAN19G3058 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.7e-12 75.9 198 32.8
FAN23G0607 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.7e-12 75.9 198 32.8
FAN26G1982 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.7e-12 75.9 198 32.8
FAN28G0496 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.7e-12 75.9 198 32.8
Cpa.g.sc6.351 Carica papaya HOM05D000115 ORTHO05D003511 4.9e-12 75.5 194 30.4
Aa31LG1G18030 Aethionema arabicum HOM05D000115 ORTHO05D003511 6.4e-12 75.1 191 29.8
AL697U10020 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 6.4e-12 75.1 194 31.4
Eucgr.F03141 Eucalyptus grandis HOM05D000115 ORTHO05D003511 6.4e-12 75.1 183 32.2
AL8G41100 Arabidopsis lyrata HOM05D000115 ORTHO05D003511 8.4e-12 74.7 194 31.4
HPP92_015729 Vanilla planifolia HOM05D000115 ORTHO05D003511 8.4e-12 74.7 194 30.4
RcHm_v2.0_Chr2g0096721 Rosa chinensis HOM05D000115 ORTHO05D003511 1.1e-11 74.3 199 31.2
AT5G63870 Arabidopsis thaliana HOM05D000115 ORTHO05D003511 1.4e-11 73.9 194 30.9
LjContig00247g0006698 Lotus japonicus HOM05D000115 ORTHO05D003511 1.4e-11 73.9 192 31.2
Sc16g0004370 Simmondsia chinensis HOM05D000115 ORTHO05D003511 1.4e-11 73.9 193 31.1
MD15G1227500 Malus domestica HOM05D000115 ORTHO05D003511 2.4e-11 73.2 192 30.2
Glyma.09G195800 Glycine max HOM05D000115 ORTHO05D003511 3.2e-11 72.8 192 31.8
Phvul.003G272100 Phaseolus vulgaris HOM05D000115 ORTHO05D003511 3.2e-11 72.8 195 30.8
MD02G1108000 Malus domestica HOM05D000115 ORTHO05D003511 4.1e-11 72.4 192 30.7
QL09p001102 Quercus lobata HOM05D000030 ORTHO05D003511 5.4e-11 72.0 193 31.1
Glyma.16G114700 Glycine max HOM05D000115 ORTHO05D003511 7.1e-11 71.6 192 31.8
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 1.2e-10 70.9 182 28.6
FvH4_1g09700 Fragaria vesca HOM05D000115 ORTHO05D003511 1.2e-10 70.9 191 31.4
Prupe.2G305700 Prunus persica HOM05D000115 ORTHO05D003511 2.1e-10 70.1 191 30.4
PGSC0003DMG400007884 Solanum tuberosum HOM05D000115 ORTHO05D003511 2.1e-10 70.1 196 28.6
Cc07_g12260 Coffea canephora HOM05D000115 ORTHO05D003511 3.5e-10 69.3 192 32.3
Sabra01G0143300 Salix brachista HOM05D000115 ORTHO05D050563 3.5e-10 69.3 200 30.0
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 4.6e-10 68.9 169 30.8
Potri.001G196600 Populus trichocarpa HOM05D000115 ORTHO05D050563 1.3e-09 67.4 200 30.0
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 1.3e-09 67.4 208 26.9
arahy.Tifrunner.gnm1.ann1.Q538IK Arachis hypogaea HOM05D000115 ORTHO05D003511 6.6e-09 65.1 212 26.9
unitig_0.g2634 Utricularia gibba HOM05D000115 ORTHO05D003511 9.6e-08 61.2 198 26.3
CBR_g58154 Chara braunii HOM05D000115 ORTHO05D003511 3.6e-07 59.3 197 26.9
vmacro20272 Vaccinium macrocarpon HOM05D000115 ORTHO05D003511 3.6e-07 59.3 170 29.4
A06p13080 Brassica napus HOM05D000115 ORTHO05D100276 2.4e-06 56.6 75 45.3
arahy.Tifrunner.gnm1.ann1.5JAI4A Arachis hypogaea HOM05D000115 ORTHO05D003511 3.1e-06 56.2 137 32.1
A07p14240 Brassica napus HOM05D000115 ORTHO05D003511 6.8e-06 55.1 31 83.9


User provided reference genes

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