Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-258 896.0 458 100.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.5e-251 872.5 458 97.8
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.6e-250 867.8 459 96.9
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 8.0e-250 866.7 459 96.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 8.0e-250 866.7 456 97.4
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 5.0e-244 847.4 449 96.4
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 8.6e-244 846.7 458 94.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.1e-243 846.3 459 94.1
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-242 841.3 459 95.0
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.0e-241 839.7 458 93.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.9e-239 831.6 458 93.2
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 6.4e-239 830.5 459 93.0
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 6.4e-239 830.5 458 93.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.4e-238 827.4 458 92.8
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 2.3e-236 822.0 459 91.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.0e-228 796.6 461 90.0
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 8.1e-218 760.4 460 83.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-214 750.0 389 97.4
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 3.2e-214 748.4 382 98.2
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-203 713.0 455 84.6
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.7e-199 699.5 454 77.1
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.8e-199 698.4 455 78.2
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.7e-197 692.2 453 77.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.0e-196 688.7 414 82.1
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.1e-194 682.6 459 75.6
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.1e-193 680.2 398 83.4
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.5e-192 676.4 458 74.5
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 4.5e-192 674.9 452 75.4
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.0e-191 673.7 455 74.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.7e-191 672.9 466 75.3
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.2e-191 672.5 457 73.7
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.2e-191 672.5 457 75.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 6.5e-191 671.0 455 74.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 8.4e-191 670.6 460 74.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.1e-190 670.2 455 74.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.2e-189 666.8 462 74.7
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.2e-189 666.8 454 74.2
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.1e-189 666.0 403 83.1
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.5e-189 665.2 459 75.8
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 6.0e-189 664.5 451 74.7
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 6.0e-189 664.5 462 74.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.0e-188 663.7 411 80.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.3e-188 663.3 454 74.7
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.3e-188 663.3 451 74.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.3e-188 663.3 449 74.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 1.8e-188 662.9 454 75.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.8e-188 662.9 396 82.1
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.3e-188 662.5 461 75.1
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.0e-188 662.1 464 73.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.1e-187 660.2 464 72.4
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.9e-187 659.4 436 78.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.9e-187 659.4 436 75.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.9e-187 659.4 396 82.6
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.3e-187 658.7 447 75.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.3e-187 658.3 384 84.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 7.4e-187 657.5 393 81.7
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 7.4e-187 657.5 394 81.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 7.4e-187 657.5 460 73.5
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.6e-186 656.4 425 76.9
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.6e-186 656.4 405 80.5
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.1e-186 656.0 474 72.8
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 2.1e-186 656.0 460 74.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 2.8e-186 655.6 389 82.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 4.8e-186 654.8 466 74.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 8.2e-186 654.1 454 74.4
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.4e-185 653.3 457 74.4
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.8e-185 652.9 459 72.8
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.4e-185 652.5 436 74.8
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.4e-185 652.5 464 72.8
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.4e-185 652.5 432 76.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.4e-185 652.5 461 72.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.1e-185 652.1 452 72.6
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 4.1e-185 651.7 457 72.0
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 6.9e-185 651.0 459 72.5
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 9.0e-185 650.6 434 75.3
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.2e-184 650.2 461 71.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.6e-184 649.0 457 72.9
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.5e-184 648.3 379 81.8
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.3e-183 646.7 394 81.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.7e-183 646.4 437 75.5
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.2e-183 646.0 385 82.1
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 2.9e-183 645.6 447 72.5
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 5.0e-183 644.8 443 72.9
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.1e-182 643.7 450 72.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-182 643.3 457 71.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.9e-182 642.9 457 71.6
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.9e-182 642.9 397 78.6
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.5e-182 642.5 460 71.1
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.2e-182 642.1 405 79.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.2e-182 642.1 453 72.2
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 4.2e-182 641.7 454 71.4
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 5.5e-182 641.3 457 70.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 7.2e-182 641.0 459 73.0
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.6e-181 639.8 388 80.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.1e-181 639.4 454 71.6
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.6e-181 638.3 451 71.4
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 6.1e-181 637.9 385 80.8
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.0e-180 637.1 464 69.8
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.9e-180 635.2 451 71.0
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.3e-178 630.2 454 70.3
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.7e-175 619.8 440 72.3
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 5.0e-175 618.2 479 67.2
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.7e-171 604.7 404 73.3
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.7e-171 604.7 407 74.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.1e-169 600.5 418 71.8
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.4e-164 583.6 442 65.8
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 9.7e-155 550.8 452 64.2
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-152 542.3 356 71.9
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-149 533.5 279 96.4
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 2.7e-149 532.7 410 65.4
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.4e-148 530.4 371 74.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 9.1e-145 517.7 383 67.4
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.8e-143 512.3 465 60.6
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 3.2e-142 509.2 380 66.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.4e-140 503.8 452 60.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 5.4e-137 491.9 345 73.6
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.6e-134 481.9 385 60.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.7e-133 478.8 342 67.3
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 8.9e-132 474.6 366 63.7
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 3.4e-131 472.6 359 66.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.9e-130 469.5 276 83.0
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 5.2e-124 448.7 252 89.3
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.8e-120 434.9 289 71.3
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.6e-117 427.2 266 78.2
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 4.7e-117 425.6 288 75.7
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.4e-115 419.5 433 54.3
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.4e-113 412.1 367 59.4
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.2e-107 394.4 329 65.7
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.3e-103 380.9 218 90.4
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 9.0e-100 368.2 319 64.9
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.6e-99 366.7 211 86.3
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.4e-99 366.3 250 76.0
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 9.3e-97 358.2 357 54.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.3e-94 349.7 331 52.9
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.9e-89 334.0 201 78.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 4.0e-84 316.2 226 72.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.3e-76 289.3 211 68.7
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 6.7e-71 272.3 174 76.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 3.2e-65 253.4 199 65.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 3.3e-62 243.4 199 63.8
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.5e-59 234.6 124 87.9
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.4e-59 233.4 136 83.8
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.8e-55 221.1 420 36.9
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 5.1e-55 219.5 291 42.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 3.3e-46 190.3 134 69.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.7e-37 161.4 113 73.5
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.2e-37 159.1 84 89.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 5.3e-36 156.4 112 73.2
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 3.8e-34 150.2 142 61.3
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 6.5e-34 149.4 112 69.6
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 8.6e-26 122.5 77 76.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 2.6e-22 110.9 64 82.8
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.7e-21 108.2 84 65.5
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 8.3e-21 105.9 117 53.0
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.7e-18 98.2 60 86.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.7e-16 90.1 60 78.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 6.8e-15 86.3 68 64.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.0e-14 84.7 58 63.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.3e-13 82.0 50 74.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.6e-11 75.1 44 79.5


User provided reference genes

Program Settings