Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 3.4e-53 211.5 110 100.0
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 5.6e-48 194.1 110 91.8
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 2.8e-47 191.8 110 90.9
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 8.0e-47 190.3 110 90.9
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.4e-43 177.6 116 83.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.8e-39 165.2 119 77.3
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.3e-33 146.4 117 71.8
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 3.0e-33 145.2 97 81.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 4.3e-32 141.4 117 70.1
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 4.4e-29 131.3 117 68.4
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 7.5e-29 130.6 123 71.5
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.3e-24 115.2 96 72.9
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.4e-19 99.8 53 94.3
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.4e-19 99.8 53 94.3
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.2e-13 80.1 97 53.6
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.2e-12 75.9 112 48.2
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.9e-12 75.5 81 54.3
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.4e-11 73.2 75 60.0
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.2e-11 72.0 55 67.3
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 4.2e-11 71.6 83 56.6
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 9.3e-11 70.5 69 55.1
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 9.3e-11 70.5 62 66.1
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.2e-10 70.1 86 52.3
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 1.6e-10 69.7 84 54.8
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 3.5e-10 68.6 114 45.6
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 3.5e-10 68.6 79 53.2
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.5e-10 68.6 93 47.3
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 4.6e-10 68.2 93 49.5
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.6e-10 68.2 60 63.3
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.8e-10 67.4 60 63.3
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.8e-10 67.4 60 63.3
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.0e-09 67.0 82 53.7
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.0e-09 67.0 47 70.2
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 3.9e-09 65.1 78 53.8
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 6.6e-09 64.3 90 48.9
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 8.7e-09 63.9 67 52.2
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 1.1e-08 63.5 89 47.2
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.5e-08 63.2 89 47.2
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.5e-08 63.2 89 47.2
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.5e-08 63.2 89 47.2
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.5e-08 62.4 111 43.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 4.3e-08 61.6 52 63.5
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.6e-08 61.2 84 48.8
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 7.3e-08 60.8 84 50.0
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 7.3e-08 60.8 50 62.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 7.3e-08 60.8 78 51.3
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 9.6e-08 60.5 54 61.1
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 9.6e-08 60.5 49 65.3
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.6e-08 60.5 52 63.5
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 9.6e-08 60.5 67 53.7
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-07 60.1 38 65.8
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.3e-07 60.1 38 65.8
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 1.3e-07 60.1 81 51.9
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.6e-07 59.7 89 42.7
BcaC01g06401 Brassica carinata HOM05D006736 ORTHO05D008459 1.6e-07 59.7 37 78.4
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.6e-07 59.7 90 38.9
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.1e-07 59.3 48 60.4
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.1e-07 59.3 57 56.1
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.8e-07 58.9 83 48.2
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 2.8e-07 58.9 78 48.7
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.8e-07 58.9 47 61.7
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.6e-07 58.5 48 58.3
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.6e-07 58.5 38 68.4
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.6e-07 58.5 38 63.2
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 3.6e-07 58.5 65 52.3
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 4.8e-07 58.2 51 56.9
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 4.8e-07 58.2 51 56.9
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 4.8e-07 58.2 71 47.9
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.8e-07 58.2 65 52.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.8e-07 58.2 53 54.7
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 4.8e-07 58.2 67 50.7
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.8e-07 58.2 67 50.7
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 4.8e-07 58.2 94 41.5
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 6.2e-07 57.8 38 68.4
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.1e-07 57.4 98 39.8
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 8.1e-07 57.4 63 52.4
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 8.1e-07 57.4 63 52.4
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.4e-06 56.6 88 43.2
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.4e-06 56.6 52 53.8
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 1.8e-06 56.2 47 63.8
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.4e-06 55.8 44 61.4
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.4e-06 55.8 40 70.0
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.4e-06 55.8 96 39.6
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.4e-06 55.8 87 42.5
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 2.4e-06 55.8 37 67.6
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.4e-06 55.8 33 72.7
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.4e-06 55.8 63 57.1
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 3.1e-06 55.5 95 40.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 3.1e-06 55.5 69 49.3
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.1e-06 55.5 93 41.9
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 3.1e-06 55.5 59 55.9
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 3.1e-06 55.5 43 65.1
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 4.0e-06 55.1 83 48.2
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 4.0e-06 55.1 86 43.0
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.0e-06 55.1 68 50.0
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.0e-06 55.1 68 50.0
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 4.0e-06 55.1 68 50.0
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 5.3e-06 54.7 78 44.9
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 5.3e-06 54.7 81 44.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 5.3e-06 54.7 39 61.5
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 5.3e-06 54.7 49 57.1
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.9e-06 54.3 78 47.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.9e-06 54.3 78 47.4
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 6.9e-06 54.3 65 47.7
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 6.9e-06 54.3 47 57.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 9.0e-06 53.9 99 38.4
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 9.0e-06 53.9 75 46.7


User provided reference genes

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