Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.4e-115 418.3 207 100.0
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 9.3e-113 410.2 207 97.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 9.3e-113 410.2 207 97.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 9.3e-113 410.2 207 97.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.5e-112 408.3 207 97.1
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.8e-111 406.0 207 96.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.1e-111 404.4 207 95.7
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 5.6e-110 401.0 206 94.7
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 7.4e-110 400.6 207 94.7
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-109 399.8 207 95.2
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.3e-109 399.8 207 95.2
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.3e-109 399.8 207 94.2
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.1e-108 395.2 207 93.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 6.9e-108 394.0 206 93.2
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-107 393.3 207 93.2
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 5.8e-107 391.0 207 92.3
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.9e-106 388.7 206 92.7
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.4e-105 385.6 203 92.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 5.5e-105 384.4 206 90.8
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 5.5e-105 384.4 206 90.8
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.1e-105 384.0 207 90.3
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.1e-102 376.7 217 84.8
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.8e-98 361.7 207 85.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.9e-86 322.8 203 75.9
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 4.3e-86 321.6 206 75.7
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 5.7e-86 321.2 203 75.9
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 3.7e-85 318.5 202 75.7
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 8.2e-85 317.4 202 74.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.8e-84 316.2 202 74.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 197 75.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.4e-84 315.8 202 74.3
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 9.1e-84 313.9 202 75.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.4e-81 306.6 203 71.9
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.9e-81 306.2 193 76.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 73.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 9.4e-81 303.9 205 72.2
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 72.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 7.9e-80 300.8 203 71.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 74.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.8e-79 299.7 203 70.9
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.8e-79 299.7 203 70.9
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.8e-79 299.7 201 70.1
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 2.3e-79 299.3 207 71.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.3e-79 299.3 206 74.3
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 70.4
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.0e-79 298.9 207 69.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.9e-79 298.5 203 70.9
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.1e-79 298.1 203 69.5
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 6.7e-79 297.7 203 70.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 6.7e-79 297.7 207 69.6
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 6.7e-79 297.7 203 72.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.8e-79 297.4 203 69.0
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.5e-78 296.6 207 71.0
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-78 295.8 205 69.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.6e-78 295.8 205 69.8
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 2.6e-78 295.8 207 69.6
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.6e-78 295.8 202 69.3
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.7e-78 294.7 203 69.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 5.7e-78 294.7 203 70.9
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.7e-78 294.7 203 70.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 7.4e-78 294.3 224 65.2
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.3e-77 293.5 204 69.1
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.3e-77 293.5 203 70.4
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.7e-77 293.1 203 72.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 1.7e-77 293.1 202 69.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 70.5
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.7e-77 292.0 204 71.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 3.7e-77 292.0 207 68.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.8e-77 291.6 200 69.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 6.3e-77 291.2 204 68.1
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 70.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.1e-76 290.4 202 69.3
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.4e-76 289.3 205 67.8
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.1e-76 288.9 203 68.5
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 4.1e-76 288.5 207 68.6
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 4.1e-76 288.5 205 70.2
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 5.3e-76 288.1 203 70.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 5.3e-76 288.1 207 70.0
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 6.9e-76 287.7 207 67.6
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.9e-76 287.7 203 70.4
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 9.1e-76 287.3 207 68.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.4e-75 285.4 202 67.8
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.5e-75 285.0 203 70.0
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 5.9e-75 284.6 203 69.5
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.7e-74 283.1 201 68.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 68.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 5.0e-74 281.6 207 67.1
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 5.0e-74 281.6 260 58.8
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.0e-74 281.6 204 67.6
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 6.5e-74 281.2 204 68.1
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.2e-73 278.9 205 68.8
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 4.2e-73 278.5 204 69.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 5.5e-73 278.1 204 65.7
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 5.5e-73 278.1 199 68.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.2e-73 277.7 203 64.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.7e-72 275.8 204 67.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.6e-72 275.4 204 65.2
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.0e-71 273.9 203 68.5
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 206 66.5
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.4e-71 273.5 203 65.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 2.3e-71 272.7 208 66.3
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.3e-71 272.7 193 66.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.3e-71 272.7 203 69.0
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.1e-70 270.4 203 65.5
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.1e-70 270.4 205 67.8
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.5e-70 270.0 206 66.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.3e-69 264.6 203 65.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 6.3e-69 264.6 210 64.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 8.2e-69 264.2 208 61.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.1e-68 263.8 203 65.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.4e-68 262.7 203 62.6
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.6e-67 259.2 205 59.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.5e-67 258.8 204 62.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.7e-67 257.7 203 64.0
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.8e-63 246.5 199 56.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 8.8e-63 244.2 204 56.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 4.4e-62 241.9 194 61.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.4e-62 241.9 206 60.2
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.8e-58 228.8 149 73.8
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 6.5e-58 228.0 208 52.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 4.4e-54 215.3 212 52.4
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 5.7e-54 214.9 212 52.4
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.8e-52 209.9 203 55.2
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.0e-51 206.5 203 52.2
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.7e-51 204.5 138 71.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 7.7e-51 204.5 145 69.0
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.3e-50 203.0 140 73.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.7e-46 188.3 140 68.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.7e-45 185.7 152 64.5
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.1e-41 174.1 128 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 9.5e-41 171.0 207 44.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.3e-39 166.4 135 60.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.2e-35 154.1 184 49.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 8.3e-29 131.3 195 37.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 2.1e-27 126.7 199 40.7
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.5e-25 120.6 132 47.7
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.6e-24 117.1 99 58.6
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 2.2e-21 106.7 203 36.5
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.9e-20 103.6 52 90.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.4e-20 103.2 77 59.7
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.6e-19 99.0 69 69.6
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.0e-18 96.3 66 68.2
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.9e-18 95.9 66 65.2
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.6e-18 94.7 137 41.6
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.6e-17 92.0 67 64.2
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 1.2e-11 74.3 42 78.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.0e-10 71.2 70 60.0
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-09 64.7 48 58.3
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-09 64.7 48 58.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.6e-08 62.8 118 33.1
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 1.1e-07 61.2 38 84.2
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.9e-07 58.5 78 42.3
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 7.6e-06 55.1 42 52.4


User provided reference genes

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