Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.8e-217 758.4 421 100.0
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 7.1e-128 461.5 380 71.6
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.7e-116 423.7 390 66.9
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.7e-116 423.7 390 66.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 4.1e-115 419.1 379 67.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 6.9e-115 418.3 391 65.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.9e-114 415.2 378 67.2
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 3.9e-102 375.9 388 62.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 5.2e-102 375.6 378 64.6
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 2.8e-100 369.8 388 62.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 5.9e-98 362.1 378 61.9
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.5e-77 294.3 373 56.8
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.3e-49 200.7 399 44.1
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.3e-25 120.9 316 34.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 4.3e-24 116.7 326 33.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.3e-24 116.7 370 30.5
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.3e-24 116.7 370 30.5
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 5.6e-24 116.3 318 33.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 7.4e-24 115.9 339 33.3
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.8e-23 114.0 440 30.9
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.4e-22 110.9 347 30.0
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.2e-21 108.6 393 31.3
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 5.8e-21 106.3 362 31.5
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 5.8e-21 106.3 372 32.3
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 5.8e-21 106.3 335 31.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 9.9e-21 105.5 310 33.2
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 8.4e-20 102.4 327 31.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.4e-19 101.7 331 30.8
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 5.5e-19 99.8 369 29.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 9.3e-19 99.0 417 31.2
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.7e-18 97.4 327 30.6
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.7e-18 97.4 327 30.6
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.9e-17 93.6 326 30.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.7e-17 92.8 360 28.9
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 6.7e-17 92.8 360 28.6
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 3.3e-16 90.5 432 28.2
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.3e-15 88.6 415 28.4
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.6e-15 88.2 305 29.5
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 4.8e-15 86.7 325 29.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-14 85.5 330 30.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.1e-14 85.5 434 30.0
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.4e-14 84.3 445 28.1
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 5.3e-14 83.2 443 28.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 6.9e-14 82.8 362 28.7
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.5e-13 81.6 372 29.0
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.6e-13 80.9 298 29.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.4e-13 80.5 312 29.2
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.5e-13 80.1 340 28.8
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.3e-12 78.6 369 30.6
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.5e-12 76.3 441 27.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.9e-11 74.7 364 26.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.5e-11 74.3 193 32.1
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.2e-11 73.6 450 26.4
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.0e-09 68.9 350 28.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.9e-09 67.0 328 29.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 6.7e-09 66.2 404 27.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 6.7e-09 66.2 431 27.1
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.1e-08 65.5 436 25.9
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.5e-08 64.3 374 26.5
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 5.7e-08 63.2 416 26.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 9.7e-08 62.4 280 27.1
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 9.7e-08 62.4 315 25.1
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.6e-07 61.6 347 27.1
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 2.8e-07 60.8 231 26.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 2.8e-07 60.8 211 32.7
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 8.2e-07 59.3 211 32.2
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.8e-06 58.2 445 27.0


User provided reference genes

Program Settings