Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 4.4e-138 494.6 243 100.0
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 6.2e-124 447.6 236 92.8
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.4e-122 441.8 236 90.3
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 6.4e-121 437.6 236 89.4
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-119 433.0 236 88.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 2.0e-114 416.0 243 84.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.9e-112 409.5 236 84.7
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 4.1e-112 408.3 236 83.1
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.7e-111 405.6 236 83.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-109 399.8 236 82.6
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-109 399.8 236 82.6
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.1e-108 396.0 237 81.0
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-106 389.0 208 92.8
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 2.9e-105 385.6 208 92.3
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 4.9e-105 384.8 208 91.8
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.9e-104 382.9 207 87.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.4e-104 382.5 208 90.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-103 380.2 207 88.4
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.1e-101 373.6 238 76.5
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.9e-93 346.3 235 70.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.3e-92 343.6 242 69.0
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 6.2e-92 341.3 234 67.9
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 5.3e-91 338.2 240 65.4
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 5.3e-91 338.2 242 67.4
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 5.3e-91 338.2 234 67.9
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 6.9e-91 337.8 243 66.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 6.9e-91 337.8 242 66.1
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.5e-90 336.7 243 67.9
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 4.5e-90 335.1 240 66.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 4.5e-90 335.1 243 66.3
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 2.2e-89 332.8 243 65.4
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 6.4e-89 331.3 250 63.6
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 6.4e-89 331.3 243 65.8
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 6.4e-89 331.3 238 66.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.1e-88 330.5 247 66.0
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.4e-88 330.1 243 64.6
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.9e-88 329.7 250 64.0
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.4e-88 329.3 251 64.1
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 3.2e-88 328.9 251 64.1
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.2e-88 328.6 249 62.7
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 4.2e-88 328.6 243 65.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.1e-87 326.2 244 63.9
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.1e-87 326.2 248 65.3
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.7e-87 325.9 246 65.0
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.7e-87 325.9 247 63.6
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.7e-87 325.9 244 63.9
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 2.7e-87 325.9 250 62.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 2.7e-87 325.9 243 65.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 3.5e-87 325.5 244 64.3
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 4.6e-87 325.1 242 65.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.3e-86 323.6 244 62.7
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 3.0e-86 322.4 240 65.0
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.0e-86 322.4 247 62.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 3.0e-86 322.4 250 61.2
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.9e-86 322.0 243 63.4
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.9e-86 322.0 244 63.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.9e-86 322.0 243 64.6
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 3.9e-86 322.0 242 64.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 6.7e-86 321.2 243 64.2
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 6.7e-86 321.2 250 63.2
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.1e-85 320.5 242 64.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.5e-85 320.1 243 63.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.9e-85 319.7 249 62.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.5e-85 319.3 238 65.1
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.5e-85 319.3 251 62.5
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 4.3e-85 318.5 244 62.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.4e-85 317.8 244 62.3
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 7.4e-85 317.8 216 69.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 9.6e-85 317.4 249 62.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 9.6e-85 317.4 248 62.5
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.8e-84 315.8 242 64.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.8e-84 315.8 245 62.0
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.8e-84 315.8 242 65.3
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 3.7e-84 315.5 244 60.7
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.2e-84 314.7 237 65.8
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 6.2e-84 314.7 250 61.6
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 8.1e-84 314.3 241 63.5
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.4e-83 313.5 244 61.5
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.8e-83 313.2 243 62.1
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 6.9e-83 311.2 235 65.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 9.0e-83 310.8 280 56.4
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.6e-82 309.3 248 63.3
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 4.5e-82 308.5 243 63.4
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 7.6e-82 307.8 237 59.9
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 2.5e-80 302.8 249 60.2
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 7.9e-79 297.7 216 64.8
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.4e-77 291.2 273 55.3
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.1e-76 289.7 166 84.3
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.8e-75 286.6 235 60.0
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 5.3e-75 285.0 206 67.0
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 2.6e-74 282.7 198 67.2
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 5.8e-74 281.6 206 65.5
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.0e-73 280.8 243 58.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.3e-73 280.4 216 63.9
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.5e-73 278.1 192 69.3
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 4.2e-72 275.4 264 53.4
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 9.3e-72 274.2 193 66.3
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.0e-70 270.8 203 67.0
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.3e-70 270.4 175 72.6
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.3e-69 265.8 233 56.7
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.7e-69 265.0 243 58.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.3e-68 263.8 218 64.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.6e-68 263.5 240 55.4
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-68 263.5 237 53.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 2.2e-68 263.1 255 54.1
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.7e-68 262.3 239 52.7
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.2e-66 257.3 196 61.7
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.0e-66 256.5 185 65.4
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.7e-66 254.6 244 50.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.5e-65 251.5 239 52.7
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.5e-65 251.1 240 50.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 7.9e-63 244.6 184 64.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 3.9e-62 242.3 228 59.6
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 8.2e-60 234.6 164 67.7
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 9.1e-59 231.1 243 51.0
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 4.5e-58 228.8 193 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.8e-57 225.7 233 49.4
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 5.0e-57 225.3 245 51.4
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 8.5e-57 224.6 230 54.3
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-56 222.2 224 50.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.7e-55 218.8 157 65.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.5e-53 213.8 172 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.7e-53 211.8 219 49.8
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 8.2e-52 208.0 221 47.5
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.4e-51 207.2 241 50.6
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.4e-51 206.5 208 51.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.6e-50 203.0 142 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.2e-48 196.1 196 51.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.5e-48 195.3 196 52.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 9.4e-48 194.5 129 70.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.4e-46 190.7 167 55.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.0e-46 189.5 173 55.5
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.4e-43 179.9 189 49.2
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.7e-39 166.4 219 40.2
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 6.8e-38 161.8 112 68.8
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.8e-33 146.0 104 64.4
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 7.2e-32 141.7 100 66.0
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 9.4e-32 141.4 106 60.4
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.6e-31 140.6 103 66.0
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.4e-30 137.5 110 63.6
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 4.2e-24 115.9 225 36.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.2e-21 107.8 156 42.3
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.3e-20 102.1 182 34.1
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.5e-16 90.9 101 45.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.5e-13 80.9 68 58.8
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.6e-13 80.1 55 61.8
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.8e-13 79.0 72 54.2
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 4.1e-11 72.8 111 35.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.2e-10 71.2 65 55.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-10 69.7 82 42.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.6e-09 65.1 46 63.0


User provided reference genes

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