Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 7.1e-67 257.3 146 100.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 4.0e-54 214.9 149 81.2
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 4.0e-54 214.9 149 81.2
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 2.6e-53 212.2 151 79.5
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 3.8e-52 208.4 149 75.8
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.0e-49 200.3 149 73.2
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.3e-49 199.9 122 83.6
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 2.5e-48 195.7 151 78.1
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 2.1e-47 192.6 151 77.5
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 6.5e-44 181.0 124 78.2
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 8.4e-44 180.6 154 68.8
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.4e-43 179.9 152 71.1
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 3.5e-42 175.3 129 74.4
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.9e-40 169.5 93 91.4
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.1e-35 153.7 158 58.2
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 3.2e-35 152.1 97 83.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 2.1e-34 149.4 126 67.5
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-33 146.4 126 65.1
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 1.8e-33 146.4 125 66.4
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.8e-33 146.4 125 66.4
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 5.1e-33 144.8 97 79.4
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.1e-33 144.8 125 65.6
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.7e-33 144.4 126 62.7
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 8.8e-33 144.1 127 64.6
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.5e-32 143.3 125 64.8
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.3e-32 142.1 126 61.9
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 3.3e-32 142.1 125 63.2
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.3e-32 142.1 126 64.3
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 3.3e-32 142.1 126 61.9
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 4.3e-32 141.7 126 61.9
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 5.7e-32 141.4 123 61.0
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 7.4e-32 141.0 124 63.7
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 7.4e-32 141.0 127 63.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 9.7e-32 140.6 123 61.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 9.7e-32 140.6 125 64.0
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 1.3e-31 140.2 125 65.6
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.7e-31 139.8 126 63.5
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 2.2e-31 139.4 127 63.0
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 3.7e-31 138.7 126 63.5
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.8e-31 138.3 134 61.2
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 6.3e-31 137.9 128 59.4
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 6.3e-31 137.9 131 62.6
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.2e-31 137.5 127 59.8
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.2e-31 137.5 127 59.8
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 8.2e-31 137.5 126 62.7
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 8.2e-31 137.5 126 61.9
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.1e-30 137.1 151 55.6
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.1e-30 137.1 126 61.9
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 1.4e-30 136.7 127 63.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.4e-30 136.7 128 61.7
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.8e-30 136.3 125 59.2
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.8e-30 136.3 125 59.2
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 1.8e-30 136.3 124 58.9
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.4e-30 136.0 123 59.3
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 3.1e-30 135.6 127 62.2
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 4.1e-30 135.2 126 58.7
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 5.3e-30 134.8 125 60.8
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 6.9e-30 134.4 129 59.7
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.5e-29 133.3 124 59.7
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.5e-29 133.3 126 59.5
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.5e-29 133.3 126 60.3
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 2.0e-29 132.9 125 56.8
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.6e-29 132.5 125 59.2
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.6e-29 132.5 126 61.1
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 4.5e-29 131.7 131 57.3
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 5.9e-29 131.3 127 59.8
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 5.9e-29 131.3 126 61.1
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 5.9e-29 131.3 124 62.1
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 7.7e-29 131.0 125 60.0
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 7.7e-29 131.0 127 60.6
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 7.7e-29 131.0 129 60.5
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 1.0e-28 130.6 126 60.3
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.0e-28 130.6 129 59.7
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.3e-28 130.2 127 59.8
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.3e-28 130.2 130 60.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.7e-28 129.8 131 57.3
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 2.9e-28 129.0 128 57.8
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.8e-28 128.6 127 58.3
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 3.8e-28 128.6 126 60.3
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 5.0e-28 128.3 126 61.1
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 5.0e-28 128.3 129 58.9
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 5.0e-28 128.3 126 59.5
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 6.5e-28 127.9 125 60.0
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 6.5e-28 127.9 124 54.8
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 8.5e-28 127.5 126 61.1
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 8.5e-28 127.5 127 59.1
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 1.1e-27 127.1 130 56.9
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.1e-27 127.1 131 58.8
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.9e-27 126.3 122 59.0
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 2.5e-27 125.9 126 60.3
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.2e-27 125.6 131 56.5
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 3.2e-27 125.6 124 56.5
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 4.2e-27 125.2 122 54.1
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 4.2e-27 125.2 127 55.9
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 7.2e-27 124.4 122 53.3
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.2e-26 123.6 127 56.7
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 3.6e-26 122.1 130 55.4
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 6.1e-26 121.3 132 53.8
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 6.1e-26 121.3 126 52.4
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 7.9e-26 120.9 125 58.4
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.4e-25 120.2 128 53.1
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.0e-25 119.0 128 54.7
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 5.1e-25 118.2 125 56.0
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 6.7e-25 117.9 130 52.3
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.1e-24 117.1 128 53.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.5e-24 116.7 130 52.3
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 3.3e-24 115.5 130 51.5
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.4e-24 115.2 129 52.7
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 2.2e-23 112.8 128 52.3
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 3.7e-23 112.1 125 52.8
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.8e-23 111.7 129 51.9
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 6.3e-23 111.3 88 69.3
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 6.3e-23 111.3 122 52.5
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 6.3e-23 111.3 128 51.6
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 8.2e-23 110.9 122 51.6
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 1.1e-22 110.5 118 51.7
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 1.5e-21 106.7 127 48.8
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 7.2e-19 97.8 120 47.5
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 9.4e-19 97.4 130 42.3
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 2.1e-18 96.3 121 48.8
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.7e-18 95.9 130 42.3
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 3.6e-18 95.5 132 44.7
BolC9t57846H Brassica oleracea HOM05D005924 ORTHO05D007290 1.0e-17 94.0 59 81.4
C09p49940 Brassica napus HOM05D002024 ORTHO05D007288 3.9e-17 92.0 59 79.7
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 5.2e-17 91.7 131 44.3
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 1.7e-15 86.7 119 50.4
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 5.3e-14 81.6 94 52.1
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 5.3e-14 81.6 51 80.4
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.9e-11 73.2 112 46.4
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.0e-08 63.2 93 46.2
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 2.2e-07 59.7 123 36.6


User provided reference genes

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