Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-232 809.7 415 100.0
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.3e-145 520.4 546 58.8
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 9.5e-141 504.2 552 59.4
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.4e-138 495.7 553 56.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 4.1e-136 488.8 547 57.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.1e-136 488.8 550 56.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 4.1e-136 488.8 547 57.8
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.8e-135 484.6 545 56.7
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.0e-134 482.6 558 54.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.5e-133 480.3 554 54.9
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.0e-130 469.9 559 54.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.9e-125 453.4 540 53.5
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 8.9e-123 444.5 413 64.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.7e-121 439.1 546 53.8
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 6.6e-102 375.2 528 47.2
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.0e-94 349.7 523 45.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-94 349.4 466 47.4
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 5.1e-94 349.0 396 52.0
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-94 349.0 527 43.6
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.1e-94 349.0 527 43.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-93 347.1 526 44.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.5e-93 346.7 472 46.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.6e-93 345.5 523 43.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.4e-93 345.1 519 44.3
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 9.6e-93 344.7 472 46.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.3e-92 344.4 492 45.3
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.1e-92 343.6 524 45.2
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.8e-92 343.2 467 46.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.6e-92 342.8 526 43.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.2e-92 342.0 537 42.6
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.1e-92 341.7 468 46.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 8.1e-92 341.7 468 46.6
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.4e-91 340.9 471 45.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.8e-91 340.5 515 43.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-91 340.1 527 42.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-91 340.1 527 42.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.2e-90 337.8 519 43.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.0e-90 337.0 525 42.9
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.4e-90 336.3 515 45.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.4e-90 336.3 397 50.1
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.5e-90 335.9 519 44.7
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 5.8e-90 335.5 533 42.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 7.6e-90 335.1 397 50.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.3e-89 334.3 397 50.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.3e-89 334.3 526 43.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.2e-89 333.6 514 41.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.8e-89 332.8 554 41.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.8e-89 332.8 554 41.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.9e-89 332.4 521 42.4
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 4.9e-89 332.4 523 42.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.4e-89 331.6 526 44.3
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.4e-89 331.6 487 43.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 8.4e-89 331.6 471 44.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-88 331.3 525 42.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-88 331.3 523 42.4
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-88 331.3 498 42.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-88 331.3 498 42.8
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.1e-88 331.3 385 49.9
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.4e-88 330.9 532 40.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.4e-88 330.9 500 44.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.9e-88 330.5 387 49.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.4e-88 330.1 525 41.9
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-88 329.7 526 44.3
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 4.2e-88 329.3 399 48.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 5.5e-88 328.9 515 42.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 5.5e-88 328.9 523 42.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.1e-88 328.6 523 42.3
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 7.1e-88 328.6 521 42.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 7.1e-88 328.6 480 43.5
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.7e-87 326.6 529 44.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.5e-87 326.2 522 42.9
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 7.9e-87 325.1 539 40.6
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 7.9e-87 325.1 463 44.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.9e-86 322.8 534 41.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.5e-85 320.9 522 43.5
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.5e-85 320.9 480 43.5
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.9e-85 320.5 404 47.0
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.9e-85 320.5 519 41.4
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 4.3e-85 319.3 534 40.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.3e-85 319.3 533 41.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.6e-85 318.2 475 43.2
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.6e-85 318.2 392 48.2
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.1e-84 317.0 393 47.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 3.7e-84 316.2 521 39.9
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.4e-83 314.3 407 46.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.4e-83 314.3 532 41.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.4e-83 313.5 522 40.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.1e-83 313.2 382 47.9
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.1e-83 313.2 382 48.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 6.9e-83 312.0 491 42.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 9.0e-83 311.6 472 43.6
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 2.6e-82 310.1 533 40.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.5e-82 309.3 382 47.6
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 5.8e-82 308.9 404 47.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.7e-81 307.4 392 46.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.2e-81 307.0 387 46.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.9e-81 306.6 404 44.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.2e-80 303.1 528 40.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.2e-80 302.8 521 40.5
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 4.2e-80 302.8 522 39.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.3e-80 301.6 393 46.3
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-79 300.1 384 47.4
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 6.0e-79 298.9 279 57.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.9e-79 298.5 409 44.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 7.9e-79 298.5 333 51.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.0e-78 298.1 481 41.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.3e-78 297.7 333 51.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.8e-75 287.3 470 40.4
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 6.9e-75 285.4 404 43.6
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.0e-74 283.9 333 47.7
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.0e-73 281.6 386 46.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.9e-73 280.0 392 41.6
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 5.0e-73 279.3 394 41.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-71 274.6 280 52.9
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 3.6e-71 273.1 401 42.1
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 6.1e-71 272.3 310 56.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 6.1e-71 272.3 387 44.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 8.2e-68 261.9 514 38.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.3e-67 259.2 458 40.6
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-65 253.8 242 55.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.9e-65 253.4 454 39.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.9e-65 253.4 242 57.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-64 251.1 156 84.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.1e-63 247.3 277 49.5
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.7e-63 246.9 240 53.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.2e-58 231.5 379 39.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 5.0e-49 199.5 202 53.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.5e-48 198.0 383 34.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.8e-46 191.0 394 32.2
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.3e-46 190.7 390 33.6
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-40 171.8 221 46.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 5.5e-40 169.5 278 44.2
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 5.2e-38 162.9 170 52.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.4e-30 138.3 292 38.4
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-30 137.5 211 50.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.0e-30 137.1 212 50.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-25 121.7 113 55.8
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-25 121.7 113 55.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 7.3e-24 115.9 113 53.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 7.3e-24 115.9 113 53.1
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 9.5e-24 115.5 136 48.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.1e-23 112.8 78 69.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.1e-23 112.8 78 69.2
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.7e-21 106.3 85 62.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.7e-20 103.6 85 58.8
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.6e-18 96.7 68 76.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 5.6e-16 89.7 217 34.6
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 9.5e-16 89.0 157 36.3
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.1e-15 87.8 98 49.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-13 81.6 179 35.2
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 2.2e-12 77.8 37 94.6
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 2.2e-12 77.8 37 94.6
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.0e-10 71.2 80 46.2
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 4.6e-10 70.1 104 34.6
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-10 69.7 209 26.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.9e-09 67.0 59 55.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-08 64.7 214 32.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-06 57.4 89 40.4


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