Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 9.0e-37 156.4 77 100.0
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 1.3e-35 152.5 77 96.1
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 4.9e-35 150.6 77 94.8
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.9e-35 150.6 77 94.8
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 4.9e-35 150.6 77 94.8
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 3.2e-34 147.9 78 94.9
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 3.5e-33 144.4 78 93.6
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 3.5e-33 144.4 78 93.6
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 7.9e-33 143.3 78 93.6
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 1.3e-32 142.5 78 93.6
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 3.0e-32 141.4 77 92.2
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.5e-31 139.0 79 89.9
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 5.6e-31 137.1 77 87.0
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 5.6e-31 137.1 77 87.0
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 7.4e-31 136.7 77 87.0
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.3e-30 136.0 77 87.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 6.2e-30 133.7 77 85.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.5e-28 129.0 77 87.0
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.6e-25 119.0 77 76.6
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 2.3e-24 115.2 68 80.9
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 2.3e-24 115.2 76 75.0
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 3.0e-24 114.8 64 82.8
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.9e-24 114.4 64 81.2
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.9e-24 114.4 64 81.2
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.9e-24 114.4 64 81.2
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.9e-24 114.4 69 76.8
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.7e-24 113.6 75 74.7
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 6.7e-24 113.6 66 75.8
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 6.7e-24 113.6 68 79.4
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 8.7e-24 113.2 67 88.1
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 8.7e-24 113.2 68 76.5
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 8.7e-24 113.2 69 75.4
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.1e-23 112.8 64 79.7
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.1e-23 112.8 64 81.2
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.5e-23 112.5 70 75.7
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.5e-23 112.5 64 82.8
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.9e-23 112.1 68 75.0
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.9e-23 112.1 68 75.0
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.9e-23 112.1 64 81.2
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 1.9e-23 112.1 62 82.3
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 2.5e-23 111.7 64 81.2
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 2.5e-23 111.7 64 81.2
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 3.3e-23 111.3 64 78.1
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 5.7e-23 110.5 58 86.2
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 5.7e-23 110.5 63 84.1
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 7.4e-23 110.2 75 73.3
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 9.6e-23 109.8 68 77.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.3e-22 109.4 69 78.3
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 2.1e-22 108.6 64 76.6
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 2.1e-22 108.6 64 78.1
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 2.8e-22 108.2 61 77.0
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 4.8e-22 107.5 68 77.9
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 6.3e-22 107.1 64 76.6
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 6.3e-22 107.1 60 76.7
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.3e-22 107.1 58 84.5
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 6.3e-22 107.1 64 76.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 6.3e-22 107.1 58 84.5
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 6.3e-22 107.1 68 73.5
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.2e-22 106.7 69 69.6
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 8.2e-22 106.7 70 71.4
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.1e-21 106.3 68 77.9
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.1e-21 106.3 58 86.2
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 1.1e-21 106.3 66 78.8
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-21 105.9 60 75.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.4e-21 105.9 58 82.8
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.4e-21 105.9 58 82.8
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 1.4e-21 105.9 58 82.8
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.8e-21 105.5 77 70.1
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 3.1e-21 104.8 66 72.7
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.1e-21 104.8 58 81.0
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.1e-21 104.8 58 81.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 3.1e-21 104.8 63 76.2
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 3.1e-21 104.8 69 68.1
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 5.3e-21 104.0 63 74.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 6.9e-21 103.6 66 71.2
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 6.9e-21 103.6 68 70.6
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 9.0e-21 103.2 64 70.3
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 9.0e-21 103.2 58 81.0
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 1.2e-20 102.8 64 70.3
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.5e-20 102.4 58 79.3
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 2.0e-20 102.1 63 74.6
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.0e-20 102.1 66 72.7
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.6e-20 101.7 60 73.3
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 3.4e-20 101.3 62 75.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.4e-20 101.3 70 71.4
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 3.4e-20 101.3 70 71.4
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 4.5e-20 100.9 64 71.9
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 4.5e-20 100.9 64 71.9
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 4.5e-20 100.9 66 71.2
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 5.9e-20 100.5 75 66.7
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 5.9e-20 100.5 75 66.7
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.2e-19 98.6 69 68.1
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 6.5e-19 97.1 68 66.2
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.4e-18 95.9 75 64.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.5e-18 95.1 68 66.2
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 3.2e-18 94.7 75 64.0
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 3.2e-18 94.7 75 64.0
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 4.2e-18 94.4 56 78.6
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 9.3e-18 93.2 56 76.8
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 9.3e-18 93.2 64 67.2
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 2.1e-17 92.0 77 57.1
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 2.7e-17 91.7 50 82.0
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 2.7e-17 91.7 54 77.8
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 4.6e-17 90.9 69 65.2
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 3.0e-16 88.2 58 67.2
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 1.5e-15 85.9 53 75.5
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.3e-06 56.2 69 40.6
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.3e-06 56.2 52 51.9


User provided reference genes

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