Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35809 Brassica carinata HOM05D002815 ORTHO05D032265 5.7e-43 177.2 89 100.0
BcaC04g20331 Brassica carinata HOM05D025122 ORTHO05D032265 1.0e-23 113.2 77 75.3
BolC9t57357H Brassica oleracea HOM05D025122 ORTHO05D032265 1.0e-23 113.2 77 75.3
BcaB05g22141 Brassica carinata HOM05D002815 ORTHO05D003409 2.8e-13 78.6 85 55.3
BcaB01g05552 Brassica carinata HOM05D002815 ORTHO05D003409 3.0e-12 75.1 92 48.9
C03p04810 Brassica napus HOM05D002815 ORTHO05D003409 3.0e-12 75.1 92 48.9
BraA03t09780Z Brassica rapa HOM05D002815 ORTHO05D003409 3.0e-12 75.1 92 48.9
TWI53G1894 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 3.0e-12 75.1 92 47.8
BcaB05g22209 Brassica carinata HOM05D002815 ORTHO05D003409 4.0e-12 74.7 91 48.4
unitig_736.g22623 Utricularia gibba HOM05D002815 ORTHO05D003409 6.8e-12 73.9 92 45.7
A03p04360 Brassica napus HOM05D002815 ORTHO05D003409 8.9e-12 73.6 92 47.8
Actinidia12206 Actinidia chinensis HOM05D002815 ORTHO05D003409 1.2e-11 73.2 88 48.9
Actinidia28889 Actinidia chinensis HOM05D002815 ORTHO05D003409 1.5e-11 72.8 88 48.9
SEGI_12429 Sequoiadendron giganteum HOM05D002815 ORTHO05D003409 1.5e-11 72.8 92 46.7
Thhalv10013980m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 2.0e-11 72.4 91 48.4
AL6G20450 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 5.7e-11 70.9 91 45.1
C02p16970 Brassica napus HOM05D002815 ORTHO05D003409 9.8e-11 70.1 89 46.1
Lj1g0001740 Lotus japonicus HOM05D002815 ORTHO05D003409 1.3e-10 69.7 91 45.1
Sc07g0001510 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.3e-10 69.7 92 45.7
CDE02G3240 Ceratophyllum demersum HOM05D002815 ORTHO05D003409 1.7e-10 69.3 92 45.7
Thhalv10013514m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 1.7e-10 69.3 92 47.8
Ciclev10025987m.g Citrus clementina HOM05D002815 ORTHO05D003409 2.8e-10 68.6 92 43.5
Carub.0008s2574 Capsella rubella HOM05D002815 ORTHO05D003409 3.7e-10 68.2 92 44.6
Ca_17698_v3 Cicer arietinum L. HOM05D002815 ORTHO05D003409 3.7e-10 68.2 92 44.6
Nn5g28923 Nelumbo nucifera HOM05D002815 ORTHO05D003409 3.7e-10 68.2 92 45.7
Haze_25031 Corylus avellana HOM05D002815 ORTHO05D003409 4.9e-10 67.8 92 44.6
SMO367G1178 Selaginella moellendorffii HOM05D002815 ORTHO05D003409 4.9e-10 67.8 90 44.4
AL8G42410 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 6.3e-10 67.4 92 44.6
Hma1.2p1_0375F.1_g138590 Hydrangea macrophylla HOM05D002815 ORTHO05D003409 6.3e-10 67.4 92 45.7
AT5G10010 Arabidopsis thaliana HOM05D002815 ORTHO05D003409 1.1e-09 66.6 91 42.9
PGR102G0114 Punica granatum HOM05D002815 ORTHO05D003409 1.1e-09 66.6 92 44.6
TAR625G0199 Trochodendron aralioides HOM05D002815 ORTHO05D003409 1.1e-09 66.6 91 45.1
vmacro22670 Vaccinium macrocarpon HOM05D002815 ORTHO05D003409 1.4e-09 66.2 91 44.0
Glyma.20G028200 Glycine max HOM05D002815 ORTHO05D003409 1.8e-09 65.9 92 44.6
Carub.0006s0847 Capsella rubella HOM05D002815 ORTHO05D003409 2.4e-09 65.5 91 42.9
TPR.G2180 Trifolium pratense HOM05D002815 ORTHO05D003409 2.4e-09 65.5 92 43.5
CiPaw.03G135000 Carya illinoinensis HOM05D002815 ORTHO05D003409 3.1e-09 65.1 92 43.5
BcaB08g37149 Brassica carinata HOM05D002815 ORTHO05D003409 4.1e-09 64.7 91 44.0
Cc07_g16040 Coffea canephora HOM05D002815 ORTHO05D003409 4.1e-09 64.7 91 45.1
CiPaw.04G092700 Carya illinoinensis HOM05D002815 ORTHO05D003409 5.4e-09 64.3 91 41.8
Cc02_g32850 Coffea canephora HOM05D002815 ORTHO05D003409 5.4e-09 64.3 91 44.0
Lalb_Chr07g0184831 Lupinus albus HOM05D002815 ORTHO05D003409 5.4e-09 64.3 92 43.5
QL06p032363 Quercus lobata HOM05D002815 ORTHO05D003409 5.4e-09 64.3 90 40.0
HPP92_018242 Vanilla planifolia HOM05D002815 ORTHO05D003409 7.0e-09 63.9 92 43.5
MD15G1083500 Malus domestica HOM05D002815 ORTHO05D003409 1.2e-08 63.2 90 42.2
Glyma.04G220100 Glycine max HOM05D002815 ORTHO05D003409 1.6e-08 62.8 91 42.9
Aqoxy5G01953 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 2.0e-08 62.4 91 41.8
Prupe.1G436000 Prunus persica HOM05D002815 ORTHO05D003409 2.0e-08 62.4 91 42.9
C09p67550 Brassica napus HOM05D002815 ORTHO05D003409 2.7e-08 62.0 91 42.9
BolC9t59516H Brassica oleracea HOM05D002815 ORTHO05D003409 2.7e-08 62.0 91 42.9
Lalb_Chr11g0068021 Lupinus albus HOM05D002815 ORTHO05D003409 2.7e-08 62.0 91 41.8
Mapoly0126s0032 Marchantia polymorpha HOM05D002815 ORTHO05D003409 3.5e-08 61.6 92 45.7
Atru.chr4.374 Acer truncatum HOM05D002815 ORTHO05D003409 4.5e-08 61.2 91 44.0
Potri.007G082000 Populus trichocarpa HOM05D002815 ORTHO05D003409 4.5e-08 61.2 91 42.9
TWI77G0240 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 4.5e-08 61.2 94 39.4
GSVIVG01022216001 Vitis vinifera HOM05D002815 ORTHO05D003409 4.5e-08 61.2 91 42.9
ECA232G4479 Erigeron canadensis HOM05D002815 ORTHO05D003409 5.9e-08 60.8 88 40.9
RcHm_v2.0_Chr3g0452131 Rosa chinensis HOM05D002815 ORTHO05D003409 7.8e-08 60.5 91 37.4
FAN14G3004 Fragaria x ananassa HOM05D002815 ORTHO05D003409 1.0e-07 60.1 89 38.2
HanXRQChr09g0254771 Helianthus annuus HOM05D002815 ORTHO05D003409 1.0e-07 60.1 90 42.2
HanXRQChr10g0305391 Helianthus annuus HOM05D002815 ORTHO05D003409 1.3e-07 59.7 91 41.8
arahy.Tifrunner.gnm1.ann1.HMT8RT Arachis hypogaea HOM05D002815 ORTHO05D003409 2.3e-07 58.9 92 41.3
arahy.Tifrunner.gnm1.ann1.U2FY0G Arachis hypogaea HOM05D002815 ORTHO05D003409 2.3e-07 58.9 92 41.3
Thhalv10015997m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 2.3e-07 58.9 118 38.1
BcaB05g21510 Brassica carinata HOM05D002815 ORTHO05D003409 2.9e-07 58.5 89 39.3
Glyma.05G183300 Glycine max HOM05D002815 ORTHO05D003409 2.9e-07 58.5 91 40.7
Zm00001eb425460 Zea mays HOM05D002815 ORTHO05D003409 2.9e-07 58.5 85 42.4
BcaC04g19355 Brassica carinata HOM05D002815 ORTHO05D003409 3.9e-07 58.2 91 41.8
A10p27480 Brassica napus HOM05D002815 ORTHO05D003409 3.9e-07 58.2 91 41.8
BraA10t44800Z Brassica rapa HOM05D002815 ORTHO05D003409 3.9e-07 58.2 91 41.8
Aqoxy2G03245 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 5.0e-07 57.8 78 41.0
FvH4_6g09260 Fragaria vesca HOM05D002815 ORTHO05D003409 5.0e-07 57.8 89 37.1
VMungo0251G0260 Vigna mungo HOM05D002815 ORTHO05D003409 6.6e-07 57.4 88 38.6
CsaV3_6G045970 Cucumis sativus L. HOM05D002815 ORTHO05D003409 1.1e-06 56.6 92 40.2
Sc03g0004290 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.1e-06 56.6 91 40.7
ATR0564G233 Amborella trichopoda HOM05D002815 ORTHO05D003409 1.9e-06 55.8 91 40.7
arahy.Tifrunner.gnm1.ann1.RGT2W8 Arachis hypogaea HOM05D002815 ORTHO05D003409 1.9e-06 55.8 91 40.7
Sp6g33390 Schrenkiella parvula HOM05D002815 ORTHO05D003409 1.9e-06 55.8 91 40.7
Duzib187G1281 Durio zibethinus HOM05D002815 ORTHO05D003409 3.3e-06 55.1 91 37.4
FvH4_6g03590 Fragaria vesca HOM05D002815 ORTHO05D003409 5.6e-06 54.3 91 35.2
FAN14G2732 Fragaria x ananassa HOM05D002815 ORTHO05D003409 5.6e-06 54.3 91 35.2
arahy.Tifrunner.gnm1.ann1.5BMY1P Arachis hypogaea HOM05D002815 ORTHO05D003409 9.5e-06 53.5 91 39.6
FAN02G0216 Fragaria x ananassa HOM05D002815 ORTHO05D003409 9.5e-06 53.5 91 35.2
FAN09G3609 Fragaria x ananassa HOM05D002815 ORTHO05D003409 9.5e-06 53.5 91 35.2
RcHm_v2.0_Chr3g0459621 Rosa chinensis HOM05D002815 ORTHO05D003409 9.5e-06 53.5 89 36.0


User provided reference genes

Program Settings