Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 7.0e-17 90.1 68 100.0
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 2.7e-16 88.2 68 95.6
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 2.7e-16 88.2 68 95.6
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 3.5e-16 87.8 68 95.6
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 7.7e-16 86.7 68 72.1
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 7.7e-16 86.7 68 72.1
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 7.7e-16 86.7 68 92.6
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.3e-15 85.9 68 91.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 70.6
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 70.6
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 2.2e-15 85.1 68 70.6
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 3.8e-15 84.3 68 92.6
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 6.5e-15 83.6 68 85.3
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.1e-14 82.8 68 88.2
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 9.4e-14 79.7 68 89.7
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 1.8e-12 75.5 62 91.9
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 80.9
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 9.8e-11 69.7 68 70.6
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.7e-10 68.9 66 68.2
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 73.5
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 54.4
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 67.6
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 52.9
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 52.9
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-10 67.4 68 52.9
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 6.3e-10 67.0 68 77.9
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.1e-09 66.2 68 61.8
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 51.5
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.8e-09 65.5 65 56.9
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.8e-09 65.5 65 56.9
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 69.7
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 51.5
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 2.4e-09 65.1 68 50.0
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 3.1e-09 64.7 64 53.1
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 70.6
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 70.6
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 67.6
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 66.2
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 50.0
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 67.6
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.4e-09 63.9 67 65.7
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 72.1
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 70.6
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 72.7
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.6e-08 62.4 68 64.7
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.0e-08 62.0 65 73.8
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 57.4
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.0e-08 62.0 65 58.5
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 2.0e-08 62.0 61 75.4
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 63.6
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 2.7e-08 61.6 67 56.7
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 2.7e-08 61.6 67 56.7
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 2.7e-08 61.6 61 57.4
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 53.2
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 69.7
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.5e-08 61.2 66 74.2
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 3.5e-08 61.2 68 52.9
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 72.7
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 47.1
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 69.1
Aa31LG9G16900 Aethionema arabicum HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 75.0
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 5.9e-08 60.5 66 69.7
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 69.1
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 66.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 64.7
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 47.8
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 48.5
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 49.2
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 49.2
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 49.2
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 68.2
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 48.5
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 60.6
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 53.7
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 53.7
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 53.7
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 60.3
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 59.1
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 59.1
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 46.2
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 47.7
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 47.7
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 47.7
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 47.7
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 46.2
SpUn0185_0020 Schrenkiella parvula HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 73.5
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 47.0
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.8e-07 57.8 66 65.2
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 3.8e-07 57.8 62 64.5
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 5.0e-07 57.4 66 62.1
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 5.0e-07 57.4 63 49.2
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 73.5
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 6.6e-07 57.0 65 50.8
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 48.5
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.6e-07 57.0 62 66.1
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 8.6e-07 56.6 66 60.6
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 8.6e-07 56.6 65 73.8
Phvul.004G047200 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 8.6e-07 56.6 65 72.3
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 48.5
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 48.5
Sc10g0001460 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.9e-06 55.5 33 87.9
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 68 51.5
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.5e-06 55.1 68 63.2
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 69 59.4
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.5e-06 55.1 35 80.0
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 3.3e-06 54.7 63 60.3
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 51.5
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.5e-06 53.9 60 45.0
Lalb_Chr21g0318071 Lupinus albus HOM05D015498 ORTHO05D015153 5.5e-06 53.9 65 72.3
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 66.7
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 5.5e-06 53.9 65 61.5
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 71.2
Carub.0007s3711 Capsella rubella HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 72.1
CiPaw.04G005500 Carya illinoinensis HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 67.6
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 7.2e-06 53.5 67 50.7
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 7.2e-06 53.5 66 43.9
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 62.1


User provided reference genes

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