Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 8.6e-57 223.4 111 100.0
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 1.6e-42 176.0 94 92.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 4.6e-42 174.5 94 91.5
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 5.1e-41 171.0 94 88.3
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 5.1e-41 171.0 94 88.3
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 5.1e-41 171.0 94 88.3
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 6.6e-41 170.6 96 88.5
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 9.6e-40 166.8 95 85.3
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.1e-39 165.6 94 88.3
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 2.1e-39 165.6 94 85.1
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 2.1e-39 165.6 94 85.1
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 6.2e-39 164.1 94 87.2
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 1.1e-38 163.3 94 87.2
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 4.0e-38 161.4 95 84.2
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 7.9e-34 147.1 110 73.6
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 7.9e-34 147.1 110 73.6
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.1e-32 143.3 87 81.6
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.5e-32 142.9 87 80.5
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 2.1e-31 139.0 97 76.3
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.8e-31 138.7 91 76.9
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 2.0e-29 132.5 87 74.7
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 4.5e-29 131.3 87 72.4
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.8e-29 131.0 87 71.3
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 9.9e-29 130.2 87 71.3
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.3e-28 129.8 87 72.4
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.7e-28 129.4 87 73.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.9e-28 128.6 87 71.3
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 3.8e-28 128.3 87 70.1
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.9e-28 127.9 87 70.1
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 6.4e-28 127.5 87 70.1
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 6.4e-28 127.5 96 64.6
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.4e-27 126.3 87 67.8
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.9e-27 125.9 87 67.8
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.9e-27 125.9 102 61.8
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 3.2e-27 125.2 87 69.0
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 4.2e-27 124.8 102 59.8
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 5.5e-27 124.4 87 70.1
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 5.5e-27 124.4 98 63.3
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.5e-27 124.4 98 62.2
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 7.1e-27 124.0 87 66.7
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 7.1e-27 124.0 87 67.8
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.2e-26 123.2 87 69.0
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.2e-26 123.2 87 66.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.2e-26 123.2 87 69.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.6e-26 122.9 87 69.0
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.6e-26 122.9 87 67.8
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.6e-26 122.9 87 69.0
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.1e-26 122.5 87 69.0
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 2.1e-26 122.5 87 67.8
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.1e-26 122.5 87 66.7
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 2.7e-26 122.1 98 62.2
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.7e-26 122.1 87 69.0
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 3.5e-26 121.7 87 69.0
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 3.5e-26 121.7 87 67.8
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 4.6e-26 121.3 87 65.5
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 4.6e-26 121.3 87 67.8
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 4.6e-26 121.3 98 64.3
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.0e-26 120.9 87 65.5
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 6.0e-26 120.9 87 65.5
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.0e-26 120.9 87 67.8
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 6.0e-26 120.9 87 65.5
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 7.9e-26 120.6 93 63.4
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.0e-25 120.2 87 66.7
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.0e-25 120.2 87 66.7
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.0e-25 120.2 87 65.5
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.0e-25 120.2 87 65.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.0e-25 120.2 87 67.8
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-25 119.8 87 67.8
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-25 119.8 87 67.8
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.8e-25 119.4 87 65.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.3e-25 119.0 87 64.4
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.3e-25 119.0 87 65.5
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-25 118.6 87 66.7
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-25 118.6 87 66.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 3.0e-25 118.6 95 61.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.9e-25 118.2 108 58.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 3.9e-25 118.2 108 58.3
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 5.1e-25 117.9 87 63.2
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 5.1e-25 117.9 87 64.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 6.7e-25 117.5 87 62.1
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 8.7e-25 117.1 108 58.3
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.1e-24 116.7 87 62.1
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.1e-24 116.7 87 64.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.1e-24 116.7 87 66.7
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.1e-24 116.7 87 64.4
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 1.5e-24 116.3 108 55.6
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.5e-24 116.3 87 64.4
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.5e-24 116.3 87 65.5
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.5e-24 116.3 87 65.5
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.3e-24 115.2 87 63.2
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 3.3e-24 115.2 87 64.4
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.3e-24 114.8 87 64.4
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 4.3e-24 114.8 83 66.3
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 9.6e-24 113.6 87 62.1
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 9.6e-24 113.6 87 62.1
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 9.6e-24 113.6 87 59.8
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.3e-23 113.2 103 60.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.8e-23 112.1 95 61.1
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 4.0e-22 108.2 87 57.5
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 5.3e-22 107.8 86 57.0
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.5e-21 106.3 77 64.9
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.5e-21 106.3 77 64.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.0e-21 105.9 82 58.5
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.4e-21 105.1 82 58.5
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.5e-21 104.8 77 63.6
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.5e-19 99.0 69 65.2
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-19 98.6 87 60.9
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.2e-19 98.6 102 53.9
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 3.2e-19 98.6 102 53.9
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.2e-19 98.6 67 64.2
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 4.2e-19 98.2 99 48.5
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 5.5e-19 97.8 70 64.3
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 7.1e-19 97.4 86 54.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 7.1e-19 97.4 70 64.3
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.3e-19 97.1 68 63.2
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 9.3e-19 97.1 70 62.9
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.7e-18 95.5 101 49.5
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 2.7e-18 95.5 67 62.7
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 4.6e-18 94.7 96 53.1
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 6.0e-18 94.4 69 62.3
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 7.9e-18 94.0 68 63.2
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.3e-17 93.2 77 54.5
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.0e-17 92.0 68 61.8
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 3.9e-17 91.7 96 49.0
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 6.7e-17 90.9 68 61.8
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 6.7e-17 90.9 68 61.8
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 6.7e-17 90.9 72 58.3
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 8.7e-17 90.5 69 59.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 5.7e-16 87.8 87 55.2
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.6e-15 86.3 59 67.8
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.8e-15 84.7 56 69.6
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 6.3e-15 84.3 87 41.4
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.8e-14 82.8 87 42.5
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.0e-12 77.0 48 72.9
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 1.3e-12 76.6 92 42.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.9e-12 75.5 48 70.8
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.4e-11 73.2 48 66.7
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.9e-11 72.8 49 67.3
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 3.2e-11 72.0 86 39.5
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.2e-10 70.1 48 62.5
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-08 63.2 80 45.0
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-08 63.2 80 45.0
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 8.2e-07 57.4 68 36.8


User provided reference genes

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