Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 4.5e-118 427.9 216 100.0
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 2.3e-61 239.6 135 91.9
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 4.3e-60 235.3 136 89.7
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 5.6e-60 235.0 134 89.6
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 5.6e-60 235.0 134 89.6
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 2.3e-58 229.6 138 86.2
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 1.7e-56 223.4 140 85.0
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 1.9e-52 209.9 139 80.6
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 2.0e-49 199.9 139 75.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 2.6e-49 199.5 139 76.3
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 2.2e-48 196.4 139 77.0
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 2.8e-43 179.5 139 71.2
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 4.9e-40 168.7 137 68.6
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 7.8e-38 161.4 86 84.9
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 2.8e-35 152.9 142 59.9
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 1.1e-34 151.0 87 81.6
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 1.4e-34 150.6 132 59.8
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 9.0e-34 147.9 90 78.9
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 2.6e-33 146.4 85 77.6
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 2.6e-33 146.4 127 63.0
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 2.6e-33 146.4 103 70.9
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 7.6e-33 144.8 121 62.0
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 7.6e-33 144.8 121 62.0
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 9.9e-33 144.4 128 60.2
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.2e-32 143.3 133 57.1
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.2e-32 143.3 133 57.1
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 2.9e-32 142.9 87 77.0
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 2.9e-32 142.9 86 77.9
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 4.9e-32 142.1 132 57.6
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 6.4e-32 141.7 85 76.5
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 6.4e-32 141.7 89 75.3
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 8.4e-32 141.4 114 63.2
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 8.4e-32 141.4 89 74.2
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.1e-31 141.0 89 73.0
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 1.4e-31 140.6 135 56.3
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 1.9e-31 140.2 86 75.6
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 1.9e-31 140.2 130 57.7
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 5.4e-31 138.7 104 66.3
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 9.3e-31 137.9 121 59.5
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 9.3e-31 137.9 90 74.4
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 9.3e-31 137.9 101 65.3
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.2e-30 137.5 94 73.4
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.2e-30 137.5 94 73.4
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.2e-30 137.5 104 64.4
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.2e-30 137.5 104 64.4
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 1.2e-30 137.5 135 55.6
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 1.2e-30 137.5 93 72.0
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 1.6e-30 137.1 91 69.2
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 2.1e-30 136.7 104 64.4
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-30 136.7 79 77.2
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 2.1e-30 136.7 85 74.1
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 3.5e-30 136.0 83 75.9
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 6.0e-30 135.2 88 72.7
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 1.0e-29 134.4 119 60.5
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 1.0e-29 134.4 109 64.2
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 1.3e-29 134.0 92 69.6
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 2.3e-29 133.3 114 56.1
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 2.3e-29 133.3 137 54.7
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 3.0e-29 132.9 94 67.0
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 3.0e-29 132.9 137 54.0
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 3.9e-29 132.5 127 55.9
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 3.9e-29 132.5 114 61.4
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 5.1e-29 132.1 135 55.6
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 6.7e-29 131.7 91 70.3
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 1.1e-28 131.0 131 55.0
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 1.1e-28 131.0 88 70.5
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 1.1e-28 131.0 94 68.1
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 1.5e-28 130.6 109 57.8
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 1.5e-28 130.6 110 62.7
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 1.9e-28 130.2 143 51.0
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 2.5e-28 129.8 152 50.0
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 2.5e-28 129.8 86 73.3
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 2.5e-28 129.8 85 71.8
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 2.5e-28 129.8 91 68.1
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 3.3e-28 129.4 114 59.6
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 3.3e-28 129.4 93 67.7
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 4.3e-28 129.0 92 63.0
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 5.6e-28 128.6 92 63.0
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 7.4e-28 128.3 92 62.0
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 9.6e-28 127.9 85 67.1
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 9.6e-28 127.9 111 59.5
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 2.1e-27 126.7 144 50.7
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 2.1e-27 126.7 133 49.6
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 2.8e-27 126.3 141 49.6
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 3.6e-27 125.9 87 69.0
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 3.6e-27 125.9 79 73.4
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 3.6e-27 125.9 80 70.0
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 8.1e-27 124.8 119 55.5
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.4e-26 124.0 92 66.3
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 1.8e-26 123.6 148 48.0
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 1.8e-26 123.6 64 82.8
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 2.4e-26 123.2 143 50.3
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 2.4e-26 123.2 62 83.9
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 3.1e-26 122.9 63 79.4
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 6.9e-26 121.7 90 65.6
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 6.9e-26 121.7 92 66.3
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 3.4e-25 119.4 87 66.7
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 5.8e-25 118.6 62 75.8
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 5.8e-25 118.6 63 76.2
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 7.6e-25 118.2 64 79.7
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 2.2e-24 116.7 126 54.8
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 2.9e-24 116.3 75 66.7
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 4.9e-24 115.5 121 52.1
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 6.4e-24 115.2 115 53.0
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 3.5e-22 109.4 65 70.8
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 7.9e-22 108.2 121 50.4
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 1.3e-21 107.5 108 50.9
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 3.0e-21 106.3 146 44.5
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 1.9e-20 103.6 58 77.6
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 4.3e-20 102.4 84 58.3
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 3.1e-18 96.3 82 63.4
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 9.0e-18 94.7 82 62.2
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 2.0e-17 93.6 133 44.4
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 5.5e-15 85.5 144 38.2
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 1.2e-14 84.3 82 51.2
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 3.6e-06 56.2 31 71.0


User provided reference genes

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