Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.1e-153 546.6 271 100.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.9e-142 509.2 271 92.6
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.6e-142 507.7 271 92.3
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.7e-114 416.4 263 76.4
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.6e-107 392.5 258 76.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.8e-106 388.7 258 75.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 5.5e-105 384.8 207 91.3
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.7e-93 346.7 273 67.4
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.7e-90 336.7 272 63.6
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.6e-83 312.8 203 75.9
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 7.7e-83 311.2 289 57.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 6.5e-82 308.1 203 74.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 3.0e-79 299.3 266 57.5
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 5.9e-75 285.0 279 58.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.0e-71 272.3 264 56.1
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 4.5e-59 232.3 286 45.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.0e-55 221.1 285 46.0
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.4e-55 220.7 290 43.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.2e-54 217.6 289 41.5
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.4e-54 216.1 268 44.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.8e-53 213.0 287 44.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.8e-53 213.0 281 43.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 3.7e-53 212.6 294 41.2
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.9e-53 212.2 277 42.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.9e-53 212.2 284 43.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 4.9e-53 212.2 282 45.7
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 6.3e-53 211.8 288 43.4
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.3e-53 211.8 288 42.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 8.3e-53 211.5 278 45.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.8e-52 210.3 295 42.4
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.4e-52 209.9 287 39.0
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.1e-52 209.1 288 40.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 7.0e-52 208.4 285 43.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-51 207.2 117 89.7
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 2.0e-51 206.8 277 43.0
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.0e-51 206.8 280 42.9
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.8e-51 204.9 199 52.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.7e-50 203.8 280 43.9
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.3e-50 203.4 278 42.1
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.9e-50 203.0 290 42.8
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 2.9e-50 203.0 301 40.5
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 2.9e-50 203.0 283 41.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.1e-49 201.1 286 39.9
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.5e-49 200.7 291 41.2
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.5e-49 200.7 282 41.1
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.5e-49 200.7 284 39.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.5e-49 199.9 290 40.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-49 199.9 282 40.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.6e-49 198.7 285 41.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.6e-48 197.2 277 44.4
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 3.6e-48 196.1 264 44.7
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 3.6e-48 196.1 250 43.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.6e-48 196.1 250 43.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.7e-48 195.7 288 38.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.7e-48 195.7 250 42.8
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 8.0e-48 194.9 290 41.0
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.4e-47 194.1 284 40.1
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.4e-47 194.1 295 40.3
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.4e-47 194.1 283 39.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.8e-47 193.7 299 39.1
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.8e-47 193.7 290 39.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.0e-47 192.6 250 42.8
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.2e-47 192.2 260 41.9
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.2e-47 192.2 287 39.4
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.2e-46 191.0 280 39.3
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.2e-46 191.0 283 39.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.5e-46 190.7 287 39.4
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.4e-46 189.1 289 39.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 7.5e-46 188.3 279 40.1
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 9.8e-46 188.0 120 80.0
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.9e-45 186.4 293 38.9
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 3.7e-45 186.0 270 42.6
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 6.4e-45 185.3 289 39.1
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 6.4e-45 185.3 283 38.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 6.4e-45 185.3 287 40.4
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 8.3e-45 184.9 289 39.1
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.3e-45 184.9 288 38.5
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 8.3e-45 184.9 283 41.7
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.0e-44 181.8 300 37.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 7.0e-44 181.8 283 40.3
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.6e-43 180.6 281 38.1
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.0e-43 180.3 228 45.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.7e-43 179.9 267 39.3
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 3.5e-43 179.5 249 41.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.8e-43 178.3 288 38.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 5.0e-42 175.6 288 37.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.9e-41 173.7 288 38.9
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.1e-40 170.2 204 47.5
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.3e-39 166.8 262 39.3
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.1e-36 157.9 280 35.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.9e-36 157.1 204 43.1
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.4e-36 155.6 151 54.3
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.3e-33 146.4 233 38.6
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 7.3e-33 145.2 244 37.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-31 140.6 175 43.4
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.8e-31 140.6 195 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.2e-30 137.9 300 33.3
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.6e-30 136.7 304 33.6
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.4e-30 136.3 148 47.3
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 9.9e-30 134.8 196 41.8
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.9e-29 133.3 266 33.5
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 7.1e-28 128.6 271 32.1
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.6e-27 127.5 264 33.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 2.8e-24 116.7 211 37.9
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 4.7e-24 115.9 218 32.1
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 8.1e-24 115.2 135 45.2
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.1e-23 114.8 235 33.6
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.6e-22 110.2 105 53.3
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-19 101.3 118 47.5
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.1e-19 100.5 90 55.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 3.9e-18 96.3 204 32.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 9.6e-17 91.7 255 25.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.0e-15 86.3 81 56.8
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.0e-15 86.3 81 56.8
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.8e-14 82.4 102 44.1
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.8e-14 82.4 294 25.9
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 7.6e-14 82.0 72 58.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 7.1e-12 75.5 195 28.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.3e-09 66.2 137 30.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 4.8e-08 62.8 56 51.8
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.4e-07 61.2 56 50.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.8e-07 60.8 56 48.2
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.5e-06 57.8 236 26.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.4e-06 56.6 55 45.5


User provided reference genes

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