Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35640 Brassica carinata HOM05D001976 ORTHO05D001960 4.2e-154 548.1 306 100.0
A10p10320 Brassica napus HOM05D001976 ORTHO05D001960 1.7e-134 483.0 309 90.6
BraA10t43112Z Brassica rapa HOM05D001976 ORTHO05D001960 1.4e-133 479.9 309 90.3
BcaC04g20533 Brassica carinata HOM05D001976 ORTHO05D001960 1.9e-130 469.5 309 89.3
C09p42480 Brassica napus HOM05D001976 ORTHO05D001960 3.3e-130 468.8 309 89.3
BolC9t57126H Brassica oleracea HOM05D001976 ORTHO05D001960 3.3e-130 468.8 309 89.3
Sp6g15030 Schrenkiella parvula HOM05D001976 ORTHO05D001960 5.2e-112 408.3 341 74.8
Thhalv10013997m.g Eutrema salsugineum HOM05D001976 ORTHO05D001960 1.5e-106 390.2 350 71.7
CARHR265810 Cardamine hirsuta HOM05D001976 ORTHO05D001960 4.3e-90 335.5 340 65.9
AT5G52870 Arabidopsis thaliana HOM05D001976 ORTHO05D001960 3.6e-89 332.4 330 67.3
BolC3t14216H Brassica oleracea HOM05D001976 ORTHO05D001960 2.4e-88 329.7 328 68.3
BcaB01g04213 Brassica carinata HOM05D001976 ORTHO05D001960 4.0e-88 328.9 329 66.9
A02p11540 Brassica napus HOM05D001976 ORTHO05D001960 4.2e-85 318.9 259 75.7
C03p18130 Brassica napus HOM05D001976 ORTHO05D001960 2.3e-83 313.2 325 66.2
A03p15540 Brassica napus HOM05D001976 ORTHO05D001960 2.0e-79 300.1 327 63.6
BraA03t10846Z Brassica rapa HOM05D001976 ORTHO05D001960 1.7e-78 297.0 327 63.3
BraA02t06218Z Brassica rapa HOM05D001976 ORTHO05D001960 3.8e-78 295.8 259 72.6
AL453U10010 Arabidopsis lyrata HOM05D001976 ORTHO05D001960 3.2e-77 292.7 322 63.0
AL8G27330 Arabidopsis lyrata HOM05D001976 ORTHO05D001960 1.6e-76 290.4 322 62.7
Carub.0008s1303 Capsella rubella HOM05D001976 ORTHO05D001960 1.5e-74 283.9 355 59.4
Aa31LG3G9110 Aethionema arabicum HOM05D001976 ORTHO05D001960 4.6e-68 262.3 342 56.4
C02p19220 Brassica napus HOM05D001976 ORTHO05D001960 1.8e-67 260.4 321 58.3
BolC2t08055H Brassica oleracea HOM05D001976 ORTHO05D001960 8.7e-67 258.1 321 57.9
THA.LOC104811941 Tarenaya hassleriana HOM05D001976 ORTHO05D001960 5.7e-66 255.4 313 57.8
THA.LOC104800280 Tarenaya hassleriana HOM05D001976 ORTHO05D001960 7.7e-55 218.4 316 51.3
BcaC01g06205 Brassica carinata HOM05D001976 ORTHO05D001960 2.0e-42 177.2 194 68.0
BcaC03g14490 Brassica carinata HOM05D001976 ORTHO05D001960 1.6e-28 131.0 165 58.8
Gohir.A12G254565 Gossypium hirsutum HOM05D001976 ORTHO05D001960 1.4e-27 127.9 353 37.4
Duzib084G1151 Durio zibethinus HOM05D001976 ORTHO05D001960 2.8e-25 120.2 369 34.7
Gohir.D12G255325 Gossypium hirsutum HOM05D001976 ORTHO05D001960 8.3e-25 118.6 325 37.2
Gorai.008G273000 Gossypium raimondii HOM05D001976 ORTHO05D001960 8.3e-25 118.6 325 37.2
QL09p012141 Quercus lobata HOM05D001976 ORTHO05D001960 1.4e-24 117.9 349 32.4
Medtr1g099550 Medicago truncatula HOM05D001976 ORTHO05D001960 4.5e-23 112.8 308 34.7
Potri.012G035700 Populus trichocarpa HOM05D001976 ORTHO05D001960 1.0e-22 111.7 364 33.0
Cfa016322 Carpinus fangiana HOM05D001976 ORTHO05D001960 5.0e-22 109.4 371 31.8
Thecc.03G187800 Theobroma cacao HOM05D001976 ORTHO05D001960 6.5e-22 109.0 366 33.6
Sabra15G0022800 Salix brachista HOM05D001976 ORTHO05D001960 1.1e-21 108.2 363 32.8
VMungo0720G0025 Vigna mungo HOM05D001976 ORTHO05D001960 2.5e-21 107.1 324 34.9
Ciclev10005237m.g Citrus clementina HOM05D001976 ORTHO05D001960 3.2e-21 106.7 357 35.3
Sabra12G0024400 Salix brachista HOM05D001976 ORTHO05D001960 4.2e-21 106.3 359 34.0
CiPaw.05G260400 Carya illinoinensis HOM05D001976 ORTHO05D001960 5.5e-21 105.9 370 31.6
Duzib068G1162 Durio zibethinus HOM05D001976 ORTHO05D001960 2.7e-20 103.6 370 33.5
Manes.06G154200 Manihot esculenta HOM05D001976 ORTHO05D001960 2.7e-20 103.6 385 33.0
Duzib205G1678 Durio zibethinus HOM05D001976 ORTHO05D001960 6.1e-20 102.4 360 33.6
Duzib068G0612 Durio zibethinus HOM05D001976 ORTHO05D001960 1.0e-19 101.7 370 33.5
Gorai.003G070400 Gossypium raimondii HOM05D001976 ORTHO05D001960 1.0e-19 101.7 332 33.4
Psat6g195400 Pisum sativum HOM05D001976 ORTHO05D001960 1.0e-19 101.7 338 32.5
COL.COLO4_30264 Corchorus olitorius HOM05D001976 ORTHO05D001960 1.4e-19 101.3 276 38.0
Manes.14G020600 Manihot esculenta HOM05D001976 ORTHO05D001960 1.8e-19 100.9 349 33.5
Haze_00075 Corylus avellana HOM05D001976 ORTHO05D001960 3.0e-19 100.1 359 30.6
Atru.ctg97_1.53 Acer truncatum HOM05D001976 ORTHO05D001960 4.0e-19 99.8 413 32.4
Phvul.007G075800 Phaseolus vulgaris HOM05D001976 ORTHO05D001960 6.8e-19 99.0 324 34.0
TWI14G1073 Tripterygium wilfordii HOM05D001976 ORTHO05D001960 8.8e-19 98.6 341 32.3
Potri.015G027500 Populus trichocarpa HOM05D001976 ORTHO05D001960 1.2e-18 98.2 365 31.8
arahy.Tifrunner.gnm1.ann1.251WXQ Arachis hypogaea HOM05D001976 ORTHO05D001960 2.0e-18 97.4 293 33.8
Glyma.20G163600 Glycine max HOM05D001976 ORTHO05D001960 2.0e-18 97.4 332 33.4
arahy.Tifrunner.gnm1.ann1.F5KP1I Arachis hypogaea HOM05D001976 ORTHO05D001960 2.6e-18 97.1 296 33.8
PGR142G1807 Punica granatum HOM05D001976 ORTHO05D001960 2.6e-18 97.1 320 33.8
Hma1.2p1_0327F.1_g126540 Hydrangea macrophylla HOM05D001976 ORTHO05D001960 9.8e-18 95.1 315 34.9
CANSAT21G0977 Cannabis sativa HOM05D001976 ORTHO05D001960 1.3e-17 94.7 267 37.8
FAN10G3017 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.3e-17 94.7 366 34.2
MD01G1211000 Malus domestica HOM05D001976 ORTHO05D001960 1.3e-17 94.7 353 32.3
FvH4_7g30580 Fragaria vesca HOM05D001976 ORTHO05D001960 2.8e-17 93.6 366 33.9
Gorai.004G116800 Gossypium raimondii HOM05D001976 ORTHO05D001960 4.9e-17 92.8 305 34.1
Ca_10709_v3 Cicer arietinum L. HOM05D001976 ORTHO05D001960 6.3e-17 92.4 352 31.8
FAN10G1896 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.1e-16 91.7 366 33.9
FAN01G1225 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.4e-16 91.3 365 34.0
FAN06G3899 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.4e-16 91.3 366 33.6
Glyma.10G229700 Glycine max HOM05D001976 ORTHO05D001960 5.4e-16 89.4 333 32.1
Gohir.D08G109000 Gossypium hirsutum HOM05D001976 ORTHO05D001960 5.4e-16 89.4 305 33.8
Gohir.A08G085300 Gossypium hirsutum HOM05D001976 ORTHO05D001960 7.0e-16 89.0 307 34.5
Sc13g0009330 Simmondsia chinensis HOM05D001976 ORTHO05D001960 7.0e-16 89.0 316 32.3
CiPaw.06G005400 Carya illinoinensis HOM05D001976 ORTHO05D001960 9.1e-16 88.6 370 31.1
Lalb_Chr06g0161391 Lupinus albus HOM05D001976 ORTHO05D001960 2.0e-15 87.4 282 32.3
PGR042G3355 Punica granatum HOM05D001976 ORTHO05D001960 5.9e-15 85.9 290 34.5
Cpa.g.sc3.7 Carica papaya HOM05D001976 ORTHO05D001960 1.7e-14 84.3 236 37.3
Lalb_Chr02g0141301 Lupinus albus HOM05D001976 ORTHO05D001960 1.7e-14 84.3 319 29.8
Sed0022791 Sechium edule HOM05D001976 ORTHO05D001960 1.7e-14 84.3 222 32.4
Sed0003273 Sechium edule HOM05D001976 ORTHO05D001960 2.9e-14 83.6 238 36.6
Dinv35286 Davidia involucrata HOM05D001976 ORTHO05D001960 5.0e-14 82.8 359 32.0
CsaV3_3G017620 Cucumis sativus L. HOM05D001976 ORTHO05D001960 6.6e-14 82.4 250 32.8
CsaV3_5G000980 Cucumis sativus L. HOM05D001976 ORTHO05D001960 1.9e-13 80.9 265 35.5
Eucgr.L01487 Eucalyptus grandis HOM05D001976 ORTHO05D001960 1.9e-13 80.9 310 32.9
Hund28505 Selenicereus undatus HOM05D001976 ORTHO05D001960 1.9e-13 80.9 315 31.1
Hund28507 Selenicereus undatus HOM05D001976 ORTHO05D001960 1.9e-13 80.9 315 31.1
Eucgr.A02686 Eucalyptus grandis HOM05D001976 ORTHO05D001960 2.5e-13 80.5 233 36.9
BcaC01g06204 Brassica carinata HOM05D001976 ORTHO05D001960 3.3e-13 80.1 78 60.3
RcHm_v2.0_Chr1g0379481 Rosa chinensis HOM05D001976 ORTHO05D001960 4.2e-13 79.7 312 34.6
TWI23G0128 Tripterygium wilfordii HOM05D001976 ORTHO05D001960 5.5e-13 79.3 262 32.1
Lj5g0004803 Lotus japonicus HOM05D001976 ORTHO05D001960 9.5e-13 78.6 341 30.8
Actinidia03149 Actinidia chinensis HOM05D001976 ORTHO05D001960 2.1e-12 77.4 297 31.0
GSVIVG01019432001 Vitis vinifera HOM05D001976 ORTHO05D001960 3.6e-12 76.6 338 29.9
Eucgr.K00299 Eucalyptus grandis HOM05D001976 ORTHO05D001960 1.0e-11 75.1 277 32.5
Peaxi162Scf00057g00006 Petunia axillaris HOM05D001976 ORTHO05D001960 1.0e-11 75.1 316 32.0
Actinidia34172 Actinidia chinensis HOM05D001976 ORTHO05D001960 1.8e-11 74.3 306 31.4
CSS0030727 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 2.3e-11 73.9 306 29.7
FAN06G3812 Fragaria x ananassa HOM05D001976 ORTHO05D001960 2.3e-11 73.9 220 37.7
Lj1A1009T50 Lonicera japonica HOM05D001976 ORTHO05D001960 3.0e-11 73.6 257 34.2
PGSC0003DMG400020889 Solanum tuberosum HOM05D001976 ORTHO05D001960 3.0e-11 73.6 299 30.8
vmacro06602 Vaccinium macrocarpon HOM05D001976 ORTHO05D001960 4.0e-11 73.2 317 32.5
Dinv28365 Davidia involucrata HOM05D001976 ORTHO05D001960 5.2e-11 72.8 346 31.5
TPR.G7735 Trifolium pratense HOM05D001976 ORTHO05D001960 6.8e-11 72.4 211 34.1
EL10Ac3g05382 Beta vulgaris HOM05D001976 ORTHO05D001960 8.9e-11 72.0 325 31.1
Sc19g0001020 Simmondsia chinensis HOM05D001976 ORTHO05D001960 1.5e-10 71.2 343 30.3
Actinidia31851 Actinidia chinensis HOM05D001976 ORTHO05D001960 2.0e-10 70.9 315 29.8
MELO3C006946.2 Cucumis melo HOM05D001976 ORTHO05D001960 4.4e-10 69.7 254 32.3
Solyc03g007710.3 Solanum lycopersicum HOM05D001976 ORTHO05D001960 5.7e-10 69.3 300 30.0
DCAR_020285 Daucus carota HOM05D001976 ORTHO05D001960 7.5e-10 68.9 274 30.7
Prupe.2G303400 Prunus persica HOM05D001976 ORTHO05D001960 7.5e-10 68.9 352 28.4
Sopen03g003630 Solanum pennellii HOM05D001976 ORTHO05D001960 1.3e-09 68.2 306 28.4
Actinidia08600 Actinidia chinensis HOM05D001976 ORTHO05D001960 1.7e-09 67.8 311 28.6
BcaC01g06203 Brassica carinata HOM05D001976 ORTHO05D001960 1.7e-09 67.8 56 75.0
Hma1.2p1_0142F.1_g064430 Hydrangea macrophylla HOM05D001976 ORTHO05D001960 2.2e-09 67.4 259 32.4
Rhsim03G0195500 Rhododendron simsii HOM05D001976 ORTHO05D001960 2.2e-09 67.4 316 28.8
RhsimUnG0097500 Rhododendron simsii HOM05D001976 ORTHO05D001960 2.2e-09 67.4 316 28.8
SGA_v2.0_scaffold44G16760 Striga asiatica HOM05D001976 ORTHO05D001960 2.2e-09 67.4 320 28.8
PGSC0003DMG400020887 Solanum tuberosum HOM05D001976 ORTHO05D001960 6.3e-09 65.9 324 28.4
Sed0023286 Sechium edule HOM05D001976 ORTHO05D001960 8.3e-09 65.5 252 33.3
FAN08G2781 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.1e-08 65.1 155 36.8
Rhsim09G0202200 Rhododendron simsii HOM05D001976 ORTHO05D001960 1.1e-08 65.1 222 31.5
CSS0004562 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 1.4e-08 64.7 308 29.5
CAN.G126.5 Capsicum annuum HOM05D001976 ORTHO05D001960 1.4e-08 64.7 331 29.0
Nitab4.5_0000472g0330 Nicotiana tabacum HOM05D001976 ORTHO05D001960 1.4e-08 64.7 338 28.4
TAR374G0991 Trochodendron aralioides HOM05D001976 ORTHO05D001960 1.4e-08 64.7 333 30.9
MELO3C005847.2 Cucumis melo HOM05D001976 ORTHO05D001960 1.8e-08 64.3 275 32.0
Solyc03g007700.1 Solanum lycopersicum HOM05D001976 ORTHO05D001960 1.8e-08 64.3 306 26.8
FvH4_5g03470 Fragaria vesca HOM05D001976 ORTHO05D001960 2.4e-08 63.9 139 36.7
Nitab4.5_0006643g0020 Nicotiana tabacum HOM05D001976 ORTHO05D001960 2.4e-08 63.9 337 29.1
FAN18G1913 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.2e-08 63.5 139 36.7
FAN18G1918 Fragaria x ananassa HOM05D001976 ORTHO05D001960 3.2e-08 63.5 139 36.7
TAR636G0380 Trochodendron aralioides HOM05D001976 ORTHO05D001960 3.2e-08 63.5 249 32.9
Sopen03g003640 Solanum pennellii HOM05D001976 ORTHO05D001960 5.4e-08 62.8 278 29.5
Actinidia27357 Actinidia chinensis HOM05D001976 ORTHO05D001960 7.0e-08 62.4 261 31.0
SalBow4G2190 Salvia bowleyana HOM05D001976 ORTHO05D001960 7.0e-08 62.4 317 28.4
Migut.F00266 Erythranthe guttata HOM05D001976 ORTHO05D001960 9.2e-08 62.0 309 28.8
CSS0011463 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 1.2e-07 61.6 71 57.7
Ah.13g069360 Amaranthus hybridus HOM05D001976 ORTHO05D001960 1.6e-07 61.2 330 30.3
DCAR_014525 Daucus carota HOM05D001976 ORTHO05D001960 1.6e-07 61.2 293 28.0
FAN13G0870 Fragaria x ananassa HOM05D001976 ORTHO05D001960 1.6e-07 61.2 277 29.2
Atru.chr9.2097 Acer truncatum HOM05D001976 ORTHO05D001960 2.7e-07 60.5 119 46.2
FAN04G0634 Fragaria x ananassa HOM05D001976 ORTHO05D001960 2.7e-07 60.5 229 32.8
Hma1.2p1_0216F.1_g091200 Hydrangea macrophylla HOM05D001976 ORTHO05D001960 2.7e-07 60.5 149 40.9
MD07G1281700 Malus domestica HOM05D001976 ORTHO05D001960 2.7e-07 60.5 100 50.0
Oeu036895.1 Olea europaea HOM05D001976 ORTHO05D001960 2.7e-07 60.5 296 30.1
HanXRQChr15g0493361 Helianthus annuus HOM05D001976 ORTHO05D001960 3.5e-07 60.1 292 30.1
arahy.Tifrunner.gnm1.ann1.0FHV4T Arachis hypogaea HOM05D001976 ORTHO05D001960 4.6e-07 59.7 106 42.5
ClCG07G007760 Citrullus lanatus HOM05D001976 ORTHO05D001960 5.9e-07 59.3 86 47.7
CSS0015961 Camellia sinensis var. sinensis HOM05D001976 ORTHO05D001960 1.0e-06 58.5 94 51.1
Dinv37579 Davidia involucrata HOM05D001976 ORTHO05D001960 1.3e-06 58.2 119 42.9
Cc00_g29320 Coffea canephora HOM05D001976 ORTHO05D001960 1.7e-06 57.8 226 30.5
MELO3C016332.2 Cucumis melo HOM05D001976 ORTHO05D001960 2.3e-06 57.4 140 36.4
Nitab4.5_0015034g0010 Nicotiana tabacum HOM05D001976 ORTHO05D001960 2.9e-06 57.0 176 32.4
MSTRG.27068 Avicennia marina HOM05D001976 ORTHO05D001960 3.9e-06 56.6 317 30.3
MSTRG.8694 Avicennia marina HOM05D001976 ORTHO05D001960 3.9e-06 56.6 351 29.6
PSO135G0786 Papaver somniferum HOM05D001976 ORTHO05D001960 3.9e-06 56.6 138 37.7
PGSC0003DMG400012175 Solanum tuberosum HOM05D001976 ORTHO05D001960 3.9e-06 56.6 208 33.2
Thecc.03G288300 Theobroma cacao HOM05D001976 ORTHO05D001960 3.9e-06 56.6 148 35.8
Duzib068G0824 Durio zibethinus HOM05D001976 ORTHO05D001960 5.0e-06 56.2 305 28.2
Duzib205G1380 Durio zibethinus HOM05D001976 ORTHO05D001960 6.6e-06 55.8 268 31.7
Nitab4.5_0000472g0370 Nicotiana tabacum HOM05D001976 ORTHO05D001960 6.6e-06 55.8 336 25.9
Solyc08g081710.3 Solanum lycopersicum HOM05D001976 ORTHO05D001960 6.6e-06 55.8 195 33.8
ECA238G2726 Erigeron canadensis HOM05D001976 ORTHO05D001960 8.6e-06 55.5 185 32.4
FAN13G2994 Fragaria x ananassa HOM05D001976 ORTHO05D001960 8.6e-06 55.5 284 27.8
Sopen08g030010 Solanum pennellii HOM05D001976 ORTHO05D001960 8.6e-06 55.5 192 33.9


User provided reference genes

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