Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.0e-93 345.1 170 100.0
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-88 329.7 170 95.3
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-88 327.8 170 95.3
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.0e-88 327.8 170 95.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.0e-88 327.8 170 94.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-87 326.2 170 94.7
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.2e-87 324.7 171 94.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.2e-87 324.7 171 94.2
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 7.2e-87 323.9 172 93.0
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 9.4e-87 323.6 171 93.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 9.4e-87 323.6 171 93.6
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.4e-87 323.6 170 91.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.1e-86 322.4 171 93.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 2.1e-86 322.4 170 92.4
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.7e-86 321.2 170 91.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 7.9e-86 320.5 170 90.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.8e-85 319.3 170 90.0
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 8.8e-85 317.0 171 90.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.3e-84 315.1 170 90.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.2e-83 312.4 170 88.8
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-83 311.6 170 90.6
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-82 310.1 170 87.6
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 7.0e-82 307.4 170 87.6
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.3e-80 303.1 170 84.7
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-80 302.8 170 87.6
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.7e-80 302.8 170 87.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.5e-79 297.7 170 85.9
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-78 296.6 167 86.2
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 6.7e-77 290.8 171 82.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 8.8e-77 290.4 168 82.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 2.6e-76 288.9 171 81.3
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 82.9
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 3.3e-76 288.5 171 80.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-76 288.1 170 83.5
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.3e-75 286.6 169 82.2
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.3e-75 286.6 170 79.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.8e-75 285.4 157 85.4
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-75 285.4 165 82.4
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.7e-75 285.0 170 82.9
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 4.8e-75 284.6 165 82.4
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.8e-75 284.6 165 82.4
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.8e-75 284.6 165 82.4
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 80.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 165 81.8
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 165 81.8
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.2e-75 283.9 170 81.8
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.1e-74 283.5 157 85.4
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-74 283.5 165 82.4
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 160 83.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-74 282.7 165 81.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 159 83.0
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 170 80.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.4e-74 282.3 169 79.3
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 4.1e-74 281.6 170 80.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.1e-74 281.6 172 82.6
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 5.3e-74 281.2 166 80.1
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 7.0e-74 280.8 168 81.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 7.0e-74 280.8 164 82.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 7.0e-74 280.8 160 83.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.6e-73 279.6 170 82.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 80.0
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 78.2
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 79.4
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 79.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 78.2
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.7e-72 276.2 164 80.5
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.9e-72 275.4 155 84.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.9e-72 275.4 155 84.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.5e-72 273.9 164 77.4
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 164 77.4
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.9e-71 272.7 178 76.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 4.2e-71 271.6 164 79.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.5e-71 271.2 162 79.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.5e-71 271.2 170 80.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 7.2e-71 270.8 170 77.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 7.2e-71 270.8 164 78.7
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.4e-71 270.4 170 77.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.2e-70 270.0 173 79.2
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.6e-70 269.6 178 74.2
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.6e-70 269.6 164 78.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.6e-70 269.6 171 77.8
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 76.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.7e-70 268.9 178 74.2
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.7e-70 268.1 164 79.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 6.1e-70 267.7 173 75.7
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 8.0e-70 267.3 153 81.7
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 8.0e-70 267.3 164 79.3
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 8.0e-70 267.3 149 85.2
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 8.0e-70 267.3 148 84.5
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.0e-69 266.9 151 82.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-69 266.9 149 83.9
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.4e-69 266.5 169 75.1
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.8e-69 266.2 152 80.9
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.8e-69 266.2 164 78.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.3e-69 265.8 164 75.6
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 4.0e-69 265.0 151 82.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 5.2e-69 264.6 170 80.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.8e-69 264.2 151 80.8
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 6.8e-69 264.2 174 74.7
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 8.8e-69 263.8 166 74.7
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-68 263.5 170 75.3
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 154 79.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 174 75.9
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.4e-68 261.9 151 80.8
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.4e-68 261.5 164 76.8
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 7.5e-68 260.8 155 78.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 9.8e-68 260.4 171 74.9
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 9.8e-68 260.4 158 79.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.3e-67 260.0 174 75.9
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.3e-67 260.0 174 75.9
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 75.3
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.7e-67 259.6 155 78.1
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.2e-67 259.2 151 79.5
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.2e-67 259.2 172 75.0
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.8e-67 258.1 151 81.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 6.3e-67 257.7 156 78.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 8.3e-67 257.3 155 78.7
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 178 71.3
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 153 81.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 166 74.7
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.4e-66 256.5 177 70.6
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 4.1e-66 255.0 166 74.1
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 4.1e-66 255.0 166 74.1
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.4e-66 254.6 167 73.1
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.6e-65 253.1 175 73.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.0e-65 252.7 152 77.0
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.5e-65 251.9 163 72.4
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.9e-65 251.1 175 72.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 5.9e-65 251.1 152 77.0
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.7e-64 249.6 149 81.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.9e-64 248.8 175 72.0
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.5e-64 247.7 154 77.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 6.5e-64 247.7 152 75.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.2e-63 245.4 154 76.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.7e-62 242.3 220 56.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.2e-60 236.9 146 74.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.6e-60 235.7 139 77.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 9.8e-60 233.8 139 77.0
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.2e-57 226.9 127 81.9
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.7e-57 225.7 152 71.1
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-56 223.8 140 75.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-55 218.4 129 79.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.6e-52 209.1 142 66.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.3e-51 206.8 130 75.4
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.7e-48 196.4 109 83.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.1e-47 193.7 170 64.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.7e-43 179.9 134 64.9
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 4.1e-42 175.3 134 61.2
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 7.0e-42 174.5 133 59.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.7e-41 172.6 158 56.3
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 7.8e-41 171.0 134 61.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 5.0e-40 168.3 108 79.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.6e-40 167.5 142 56.3
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.2e-38 161.4 88 90.9
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.4e-34 150.2 91 78.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 9.2e-34 147.5 86 84.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.8e-30 136.0 170 50.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.7e-30 135.2 120 52.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.0e-29 132.1 105 68.6
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-28 128.6 68 86.8
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 1.1e-26 124.0 98 65.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.4e-26 122.9 99 60.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.3e-24 116.3 139 41.0
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-24 115.5 171 38.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.1e-22 109.8 71 74.6
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.8e-22 109.4 122 42.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.8e-22 109.4 122 42.6
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-21 107.5 55 83.6
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.2e-18 95.5 65 66.2
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.3e-15 85.9 55 74.5
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 5.6e-15 85.1 96 41.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 5.6e-15 85.1 96 41.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.1e-14 83.2 49 71.4
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.8e-14 82.0 95 40.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.8e-12 75.1 42 69.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 5.8e-12 75.1 95 44.2


User provided reference genes

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