Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.9e-60 235.7 124 100.0
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 3.0e-50 201.8 147 78.2
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.1e-49 199.9 147 77.6
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.1e-49 199.9 147 77.6
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.1e-49 199.9 147 77.6
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 4.8e-48 194.5 147 75.5
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 4.8e-48 194.5 147 75.5
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.8e-47 192.6 147 72.1
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 2.0e-46 189.1 147 73.5
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 7.7e-46 187.2 148 73.0
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.3e-45 186.4 148 72.3
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 2.2e-45 185.7 148 72.3
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 4.2e-44 181.4 147 70.7
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.6e-43 179.5 147 70.7
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 1.0e-42 176.8 147 69.4
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.8e-42 176.0 147 69.4
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 5.7e-41 171.0 147 68.0
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 8.8e-34 147.1 128 65.6
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 1.3e-32 143.3 144 60.4
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 4.5e-30 134.8 119 65.5
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 7.7e-30 134.0 144 56.9
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.2e-29 132.5 144 55.6
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.1e-28 130.2 144 54.9
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.5e-28 129.8 144 56.2
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.5e-28 129.0 144 55.6
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 3.2e-28 128.6 144 55.6
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 3.2e-28 128.6 145 53.8
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.2e-28 128.6 144 54.2
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 5.5e-28 127.9 144 56.2
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 5.5e-28 127.9 144 54.9
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.6e-27 126.3 144 53.5
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.6e-27 126.3 144 54.2
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 2.1e-27 125.9 144 54.9
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.7e-27 125.6 140 55.7
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 2.7e-27 125.6 144 53.5
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.1e-27 124.4 140 55.0
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.0e-26 123.6 140 55.0
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 1.0e-26 123.6 144 54.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-26 123.2 142 54.9
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.8e-26 122.9 143 54.5
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.0e-26 122.1 146 53.4
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 3.0e-26 122.1 146 53.4
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 3.0e-26 122.1 144 54.2
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.2e-26 121.3 144 50.7
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 5.2e-26 121.3 144 52.1
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 5.2e-26 121.3 144 54.2
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 5.2e-26 121.3 144 54.2
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 5.2e-26 121.3 144 54.2
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 6.7e-26 120.9 139 55.4
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 6.7e-26 120.9 73 80.8
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 8.8e-26 120.6 144 54.2
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.5e-25 119.8 143 53.8
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 2.0e-25 119.4 142 54.2
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 2.0e-25 119.4 144 51.4
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 2.6e-25 119.0 144 52.1
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 5.7e-25 117.9 144 52.8
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 9.7e-25 117.1 143 53.1
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 9.7e-25 117.1 144 51.4
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.7e-24 116.3 144 50.0
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.7e-24 116.3 144 49.3
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.7e-24 116.3 144 50.7
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 2.2e-24 115.9 144 51.4
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.2e-24 115.9 142 51.4
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 2.8e-24 115.5 144 50.7
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 6.3e-24 114.4 130 53.8
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 8.2e-24 114.0 128 52.3
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.1e-23 113.6 131 55.0
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.8e-23 112.8 144 52.8
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 7.0e-23 110.9 143 50.3
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.2e-22 110.2 144 49.3
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 4.5e-22 108.2 140 50.7
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 5.9e-22 107.8 137 48.9
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.0e-21 107.1 144 48.6
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.3e-21 106.7 143 46.9
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.3e-21 106.7 130 50.0
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 2.9e-21 105.5 142 45.8
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 5.0e-21 104.8 132 50.8
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 6.5e-21 104.4 132 50.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.1e-20 103.6 138 50.0
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 1.1e-20 103.6 132 50.0
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.1e-20 103.6 132 50.0
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 2.5e-20 102.4 131 48.9
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.2e-20 102.1 132 47.7
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 7.2e-20 100.9 144 45.8
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 9.4e-20 100.5 131 49.6
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.2e-19 100.1 75 65.3
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 3.6e-19 98.6 143 47.6
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.6e-19 98.6 118 50.8
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 4.7e-19 98.2 120 52.5
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.0e-18 97.1 143 44.1
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 2.0e-17 92.8 82 59.8
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 5.7e-17 91.3 82 58.5
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 9.8e-17 90.5 82 58.5
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 2.8e-16 89.0 143 42.0
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.6e-14 83.2 115 49.6
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.5e-14 81.6 115 48.7
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 5.9e-14 81.3 118 43.2
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 2.9e-13 79.0 121 44.6
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 3.8e-13 78.6 115 47.8
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 8.5e-13 77.4 147 36.7
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.5e-13 77.4 82 51.2
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 2.5e-12 75.9 116 46.6
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 7.2e-12 74.3 131 37.4
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 9.4e-12 73.9 115 47.8
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 6.1e-11 71.2 46 87.0
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.0e-10 70.5 133 35.3
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 1.1e-07 60.5 33 81.8
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.8e-07 59.7 56 48.2
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 7.7e-06 54.3 144 28.5


User provided reference genes

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