Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35575 Brassica carinata HOM05D006981 ORTHO05D008719 1.6e-61 239.2 119 100.0
A10p09920 Brassica napus HOM05D006981 ORTHO05D008719 6.0e-56 220.7 116 94.0
BraA10t43072Z Brassica rapa HOM05D006981 ORTHO05D008719 3.9e-55 218.0 116 92.2
BcaC04g20601 Brassica carinata HOM05D006981 ORTHO05D008719 5.1e-55 217.6 116 94.0
BolC9t57050H Brassica oleracea HOM05D006981 ORTHO05D008719 5.1e-55 217.6 116 94.0
C09p41630 Brassica napus HOM05D006981 ORTHO05D008719 1.9e-54 215.7 116 93.1
Thhalv10015042m.g Eutrema salsugineum HOM05D006981 ORTHO05D008719 1.9e-54 215.7 119 89.9
Sp6g14470 Schrenkiella parvula HOM05D006981 ORTHO05D008719 4.0e-52 208.0 115 89.6
Aa31LG3G8600 Aethionema arabicum HOM05D006981 ORTHO05D008719 1.7e-50 202.6 117 84.6
AL8G26600 Arabidopsis lyrata HOM05D006981 ORTHO05D008719 3.5e-48 194.9 119 84.0
AT5G52220 Arabidopsis thaliana HOM05D006981 ORTHO05D008719 3.5e-48 194.9 119 84.0
Carub.0008s1231 Capsella rubella HOM05D006981 ORTHO05D008719 3.0e-47 191.8 118 81.4
CARHR265140 Cardamine hirsuta HOM05D006981 ORTHO05D008719 1.1e-46 189.9 119 80.7
THA.LOC104825097 Tarenaya hassleriana HOM05D006981 ORTHO05D008719 4.8e-45 184.5 117 76.9
CDE08G1025 Ceratophyllum demersum HOM05D006981 ORTHO05D008719 1.4e-36 156.4 120 65.0
Thecc.03G174800 Theobroma cacao HOM05D006981 ORTHO05D008719 2.4e-36 155.6 121 66.9
TWI14G0356 Tripterygium wilfordii HOM05D006981 ORTHO05D008719 1.2e-35 153.3 118 70.3
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.0e-35 152.5 122 68.0
Duzib205G0859 Durio zibethinus HOM05D006981 ORTHO05D008719 4.5e-35 151.4 121 62.8
Eucgr.K00242 Eucalyptus grandis HOM05D006981 ORTHO05D008719 4.5e-35 151.4 122 63.9
vmacro06697 Vaccinium macrocarpon HOM05D006981 ORTHO05D008719 7.6e-35 150.6 120 61.7
Ah.13g068510 Amaranthus hybridus HOM05D006981 ORTHO05D008719 1.0e-34 150.2 123 61.8
CAN.G28.6 Capsicum annuum HOM05D006981 ORTHO05D008719 1.3e-34 149.8 119 63.9
AUR62021209 Chenopodium quinoa HOM05D006981 ORTHO05D008719 1.3e-34 149.8 120 63.3
Nitab4.5_0019580g0020 Nicotiana tabacum HOM05D006981 ORTHO05D008719 1.3e-34 149.8 121 65.3
GSVIVG01010548001 Vitis vinifera HOM05D006981 ORTHO05D008719 1.7e-34 149.4 119 66.4
AUR62016001 Chenopodium quinoa HOM05D006981 ORTHO05D008719 2.9e-34 148.7 120 60.8
Manes.06G146000 Manihot esculenta HOM05D006981 ORTHO05D008719 2.9e-34 148.7 119 67.2
COL.COLO4_14290 Corchorus olitorius HOM05D006981 ORTHO05D008719 3.8e-34 148.3 122 63.9
Gohir.D08G111300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 3.8e-34 148.3 117 65.0
Gorai.004G119200 Gossypium raimondii HOM05D006981 ORTHO05D008719 3.8e-34 148.3 117 65.0
Cpa.g.sc107.36 Carica papaya HOM05D006981 ORTHO05D008719 4.9e-34 147.9 120 62.5
CsaV3_5G005720 Cucumis sativus L. HOM05D006981 ORTHO05D008719 6.5e-34 147.5 119 63.0
PGR142G3060 Punica granatum HOM05D006981 ORTHO05D008719 6.5e-34 147.5 122 62.3
SGA_v2.0_scaffold2G01066 Striga asiatica HOM05D006981 ORTHO05D008719 6.5e-34 147.5 121 62.0
Hund11756 Selenicereus undatus HOM05D006981 ORTHO05D008719 8.4e-34 147.1 119 63.0
EL10Ac3g05672 Beta vulgaris HOM05D006981 ORTHO05D008719 1.1e-33 146.7 122 64.8
MELO3C005381.2 Cucumis melo HOM05D006981 ORTHO05D008719 1.1e-33 146.7 119 63.0
Solyc06g051300.3 Solanum lycopersicum HOM05D006981 ORTHO05D008719 1.4e-33 146.4 119 61.3
ClCG01G005500 Citrullus lanatus HOM05D003170 ORTHO05D008719 1.9e-33 146.0 119 63.0
Glyma.09G140600 Glycine max HOM05D006981 ORTHO05D008719 1.9e-33 146.0 115 65.2
Nitab4.5_0000080g0060 Nicotiana tabacum HOM05D006981 ORTHO05D008719 1.9e-33 146.0 119 63.0
Sc19g0001580 Simmondsia chinensis HOM05D006981 ORTHO05D008719 1.9e-33 146.0 117 66.7
PGSC0003DMG400015647 Solanum tuberosum HOM05D006981 ORTHO05D008719 1.9e-33 146.0 119 61.3
CiPaw.03G105000 Carya illinoinensis HOM05D006981 ORTHO05D008719 4.2e-33 144.8 121 62.8
Hma1.2p1_0270F.1_g108180 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 4.2e-33 144.8 119 66.4
Phvul.004G118000 Phaseolus vulgaris HOM05D006981 ORTHO05D008719 4.2e-33 144.8 115 66.1
VMungo0464G1391 Vigna mungo HOM05D006981 ORTHO05D008719 4.2e-33 144.8 115 66.1
Ciclev10006231m.g Citrus clementina HOM05D006981 ORTHO05D008719 5.5e-33 144.4 120 65.0
Glyma.16G194500 Glycine max HOM05D006981 ORTHO05D008719 5.5e-33 144.4 115 64.3
MBI17_g21049_MAGBIO Magnolia biondii HOM05D006981 ORTHO05D008719 1.6e-32 142.9 119 60.5
Sopen06g017220 Solanum pennellii HOM05D006981 ORTHO05D008719 1.6e-32 142.9 117 60.7
TAR375G0811 Trochodendron aralioides HOM05D006981 ORTHO05D008719 1.6e-32 142.9 119 66.4
Lj2g0020265 Lotus japonicus HOM05D006981 ORTHO05D008719 2.1e-32 142.5 115 64.3
Gohir.A08G100300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 2.7e-32 142.1 123 62.6
Manes.09G002400 Manihot esculenta HOM05D006981 ORTHO05D008719 2.7e-32 142.1 119 65.5
Medtr6g471020 Medicago truncatula HOM05D006981 ORTHO05D008719 2.7e-32 142.1 115 65.2
QL09p014567 Quercus lobata HOM05D006981 ORTHO05D008719 2.7e-32 142.1 119 62.2
Cfa008306 Carpinus fangiana HOM05D006981 ORTHO05D008719 3.5e-32 141.7 121 62.0
Haze_13729 Corylus avellana HOM05D006981 ORTHO05D008719 4.6e-32 141.4 121 62.0
Migut.F00354 Erythranthe guttata HOM05D006981 ORTHO05D008719 4.6e-32 141.4 130 56.9
DCAR_009354 Daucus carota HOM05D006981 ORTHO05D008719 6.0e-32 141.0 121 57.9
HanXRQChr08g0209251 Helianthus annuus HOM05D006981 ORTHO05D008719 6.0e-32 141.0 123 59.3
Lalb_Chr19g0130931 Lupinus albus HOM05D006981 ORTHO05D008719 7.9e-32 140.6 118 61.0
Potri.015G140200 Populus trichocarpa HOM05D006981 ORTHO05D008719 7.9e-32 140.6 127 59.1
Atru.chr1.479 Acer truncatum HOM05D006981 ORTHO05D008719 1.0e-31 140.2 120 62.5
Cc02_g03150 Coffea canephora HOM05D006981 ORTHO05D008719 1.0e-31 140.2 134 56.7
ECA233G5478 Erigeron canadensis HOM05D006981 ORTHO05D008719 1.3e-31 139.8 133 57.1
Sabra15G0150900 Salix brachista HOM05D006981 ORTHO05D008719 1.3e-31 139.8 126 59.5
MSTRG.27124 Avicennia marina HOM05D006981 ORTHO05D008719 1.8e-31 139.4 121 59.5
RcHm_v2.0_Chr1g0377021 Rosa chinensis HOM05D006981 ORTHO05D008719 1.8e-31 139.4 115 61.7
Sed0011448 Sechium edule HOM05D006981 ORTHO05D008719 1.8e-31 139.4 120 60.8
FvH4_7g29270 Fragaria vesca HOM05D006981 ORTHO05D008719 3.0e-31 138.7 115 61.7
FAN03G1713 Fragaria x ananassa HOM05D006981 ORTHO05D008719 3.0e-31 138.7 115 61.7
FAN10G3446 Fragaria x ananassa HOM05D006981 ORTHO05D008719 3.0e-31 138.7 115 61.7
Oeu056238.2 Olea europaea HOM05D006981 ORTHO05D008719 5.1e-31 137.9 121 60.3
Zm00001eb309380 Zea mays HOM05D006981 ORTHO05D008719 5.1e-31 137.9 126 57.9
FAN03G1998 Fragaria x ananassa HOM05D006981 ORTHO05D008719 6.7e-31 137.5 115 61.7
FAN01G2034 Fragaria x ananassa HOM05D006981 ORTHO05D008719 8.7e-31 137.1 115 60.9
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 8.7e-31 137.1 118 60.2
Ca_25351_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 1.1e-30 136.7 115 62.6
Lsat_1_v5_gn_8_8340 Lactuca sativa HOM05D006981 ORTHO05D008719 1.1e-30 136.7 126 57.9
HPP92_028124 Vanilla planifolia HOM05D006981 ORTHO05D008719 1.1e-30 136.7 119 60.5
Prupe.2G292700 Prunus persica HOM05D006981 ORTHO05D008719 1.5e-30 136.3 117 61.5
Actinidia32871 Actinidia chinensis HOM05D006981 ORTHO05D008719 1.9e-30 136.0 142 51.4
Lj1C995G12 Lonicera japonica HOM05D006981 ORTHO05D008719 1.9e-30 136.0 123 56.9
Nn4g26525 Nelumbo nucifera HOM05D006981 ORTHO05D008719 1.9e-30 136.0 121 59.5
PSO782G4575 Papaver somniferum HOM05D006981 ORTHO05D008719 1.9e-30 136.0 129 53.5
Aqoxy7G00390 Aquilegia oxysepala HOM05D006981 ORTHO05D008719 2.5e-30 135.6 119 55.5
MD07G1267100 Malus domestica HOM05D006981 ORTHO05D008719 3.3e-30 135.2 119 59.7
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 4.3e-30 134.8 118 59.3
arahy.Tifrunner.gnm1.ann1.8WRD93 Arachis hypogaea HOM05D006981 ORTHO05D008719 7.4e-30 134.0 124 58.1
arahy.Tifrunner.gnm1.ann1.T9EWQW Arachis hypogaea HOM05D006981 ORTHO05D008719 7.4e-30 134.0 123 58.5
CANSAT21G0349 Cannabis sativa HOM05D006981 ORTHO05D008719 7.4e-30 134.0 115 59.1
PSO478G2189 Papaver somniferum HOM05D006981 ORTHO05D008719 7.4e-30 134.0 130 53.8
CSS0044451 Camellia sinensis var. sinensis HOM05D006981 ORTHO05D008719 1.3e-29 133.3 114 62.3
FAN06G1994 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.3e-29 133.3 115 61.7
unitig_747.g21767 Utricularia gibba HOM05D006981 ORTHO05D008719 2.8e-29 132.1 121 56.2
HPP92_020865 Vanilla planifolia HOM05D006981 ORTHO05D008719 4.8e-29 131.3 119 58.0
SHI13798 Sapria himalayana HOM05D006981 ORTHO05D008719 3.1e-28 128.6 148 46.6
FAN06G2660 Fragaria x ananassa HOM05D006981 ORTHO05D008719 6.9e-28 127.5 115 60.9
SMO141G0174 Selaginella moellendorffii HOM05D006981 ORTHO05D008719 1.0e-23 113.6 117 51.3
Peaxi162Scf00040g00323 Petunia axillaris HOM05D006981 ORTHO05D008719 5.7e-22 107.8 119 49.6
AagrBONN_evm.TU.Sc2ySwM_369.83 Anthoceros agrestis HOM05D006981 ORTHO05D008719 7.4e-22 107.5 121 47.1
Manes.14G129556 Manihot esculenta HOM05D006981 ORTHO05D008719 2.2e-21 105.9 73 72.6
Pp3c14_5260 Physcomitrium patens HOM05D006981 ORTHO05D008719 2.2e-21 105.9 128 49.2
Mapoly0027s0013 Marchantia polymorpha HOM05D006981 ORTHO05D008719 9.0e-20 100.5 129 46.5
Actinidia34099 Actinidia chinensis HOM05D006981 ORTHO05D008719 6.5e-18 94.4 72 59.7
Psat1g030600 Pisum sativum HOM05D006981 ORTHO05D008719 6.1e-16 87.8 64 70.3
PRCOL_00004746 Prasinoderma coloniale HOM05D006981 ORTHO05D008719 8.8e-15 84.0 121 38.8
Cre06.g281750 Chlamydomonas reinhardtii HOM05D006981 ORTHO05D008719 6.3e-13 77.8 115 38.3
Hma1.2p1_0270F.1_g108170 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 1.2e-11 73.6 58 62.1
Psat1g030360 Pisum sativum HOM05D006981 ORTHO05D008719 1.0e-10 70.5 58 55.2
SEGI_30853 Sequoiadendron giganteum HOM05D006981 ORTHO05D008719 1.9e-09 66.2 76 51.3
CBR_g4805 Chara braunii HOM05D006981 ORTHO05D008719 6.1e-08 61.2 108 33.3


User provided reference genes

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