Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 2.0e-245 852.0 444 100.0
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 9.9e-229 796.6 444 93.9
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 9.9e-229 796.6 444 93.9
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 9.9e-229 796.6 444 93.9
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 6.9e-222 773.9 444 91.2
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 2.0e-221 772.3 444 91.0
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 1.4e-211 739.6 457 85.6
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 3.7e-207 724.9 450 83.3
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 1.1e-203 713.4 462 82.9
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 1.1e-200 703.4 461 80.9
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.5e-200 703.0 456 81.4
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 1.8e-198 696.0 454 80.0
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 4.0e-198 694.9 456 81.1
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 4.3e-184 648.3 453 74.0
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 2.9e-148 529.3 463 61.3
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 9.8e-144 514.2 471 58.0
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 5.9e-141 505.0 462 58.4
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 2.9e-140 502.7 475 57.7
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.0e-137 492.3 470 56.4
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 6.8e-137 491.5 475 55.6
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 9.2e-134 481.1 473 55.8
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.0e-132 477.6 473 54.1
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 1.0e-132 477.6 478 54.6
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.3e-131 472.6 460 56.5
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.1e-129 467.6 458 56.1
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 3.1e-129 466.1 454 55.9
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.5e-128 463.8 454 55.7
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 9.8e-128 461.1 463 54.9
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.9e-127 459.5 470 52.6
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 8.3e-127 458.0 452 55.5
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 9.2e-126 454.5 463 53.6
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 3.5e-125 452.6 458 53.3
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 1.0e-124 451.1 461 52.9
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.7e-124 450.3 473 51.8
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 1.2e-122 444.1 463 54.9
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 1.4e-121 440.7 465 51.2
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 8.9e-121 438.0 476 52.1
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 4.4e-120 435.6 469 53.7
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 8.3e-119 431.4 472 49.2
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 9.2e-118 427.9 462 51.9
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 9.2e-118 427.9 473 48.8
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 2.1e-117 426.8 469 49.3
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.1e-117 426.8 464 50.0
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 3.5e-117 426.0 447 50.6
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.7e-116 423.7 466 49.8
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 3.9e-116 422.5 455 51.4
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 8.6e-116 421.4 225 92.9
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.3e-115 419.5 466 49.4
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 7.3e-115 418.3 470 50.2
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.1e-114 416.8 457 49.9
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 8.1e-114 414.8 465 51.6
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 1.1e-113 414.5 448 50.4
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 4.0e-113 412.5 471 49.5
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 1.2e-112 411.0 462 48.5
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 9.9e-112 407.9 435 53.6
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 1.7e-111 407.1 465 51.4
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 1.4e-110 404.1 446 48.2
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 1.9e-110 403.7 464 50.0
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 3.2e-110 402.9 468 47.2
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 5.4e-110 402.1 470 50.4
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 9.3e-110 401.4 458 48.0
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 9.3e-110 401.4 463 50.5
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.6e-109 400.6 465 51.0
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 2.3e-108 396.7 452 46.5
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 2.3e-108 396.7 452 46.7
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 3.0e-108 396.4 446 47.8
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 3.9e-108 396.0 462 47.4
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.3e-107 392.9 429 51.0
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.6e-106 390.6 418 49.0
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.4e-105 387.5 453 49.7
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.9e-102 377.1 452 46.9
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.9e-102 377.1 438 50.2
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 5.4e-102 375.6 460 46.5
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 2.1e-101 373.6 355 56.6
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.7e-101 373.2 395 53.4
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 5.1e-100 369.0 407 50.9
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 2.8e-98 363.2 397 50.4
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.8e-98 362.5 366 55.2
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 8.1e-98 361.7 397 51.4
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 5.3e-97 359.0 451 43.7
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.5e-96 357.5 444 48.4
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.2e-95 353.6 405 47.2
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 5.4e-94 349.0 459 43.6
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.6e-93 347.4 400 49.5
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 3.5e-93 346.3 397 49.9
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 1.8e-92 344.0 421 48.0
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.9e-89 332.0 458 46.3
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.0e-84 316.6 353 52.1
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 9.7e-75 285.0 603 33.5
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.8e-74 282.7 430 39.3
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.6e-69 267.7 228 56.1
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 4.3e-67 259.6 327 46.8
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 5.7e-67 259.2 262 56.1
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 7.2e-62 242.3 443 38.8
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 1.0e-60 238.4 250 49.6
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 1.1e-59 235.0 528 31.8
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 3.8e-47 193.4 142 66.2
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 3.4e-43 180.3 115 79.1
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.3e-39 168.3 464 27.8
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.0e-39 166.4 298 35.2
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 3.4e-35 153.7 440 31.4
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 7.7e-32 142.5 518 26.3
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 2.8e-29 134.0 448 28.3
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 8.0e-29 132.5 440 30.5
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 5.4e-25 119.8 208 38.0
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 9.2e-25 119.0 198 39.4
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 1.6e-24 118.2 111 62.2
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 4.4e-19 100.1 135 43.7
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 8.3e-18 95.9 228 32.0
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 8.3e-18 95.9 96 55.2
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 2.4e-17 94.4 135 45.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 6.6e-15 86.3 120 39.2
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 1.1e-14 85.5 176 37.5
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 4.7e-13 80.1 111 46.8
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 4.6e-08 63.5 124 28.2
VMungo0331G1316 Vigna mungo HOM05D006594 ORTHO05D008383 7.3e-06 56.2 92 35.9


User provided reference genes

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