Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 2.8e-40 168.3 94 100.0
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 6.4e-37 157.1 93 87.1
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 6.4e-37 157.1 93 87.1
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.6e-35 152.5 93 81.7
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 9.6e-33 143.3 91 76.9
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.0e-31 137.9 65 96.9
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 3.4e-30 134.8 93 68.8
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 3.4e-30 134.8 91 72.5
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 3.4e-30 134.8 91 72.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.4e-30 134.8 95 82.1
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 4.5e-30 134.4 95 72.6
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 4.5e-30 134.4 95 72.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 4.5e-30 134.4 95 72.6
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 9.9e-30 133.3 95 71.6
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.2e-29 132.1 90 72.2
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 6.4e-29 130.6 87 71.3
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 6.4e-29 130.6 65 90.8
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 2.5e-28 128.6 66 87.9
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 6.5e-21 104.0 66 68.2
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.1e-20 103.2 85 54.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 5.1e-18 94.4 91 45.1
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.7e-18 94.0 90 48.9
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.7e-18 94.0 90 48.9
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 6.7e-18 94.0 90 48.9
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.3e-17 91.3 62 61.3
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 5.7e-17 90.9 90 47.8
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 7.4e-17 90.5 62 59.7
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 9.7e-17 90.1 62 64.5
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.3e-16 89.7 93 46.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 2.2e-16 89.0 61 59.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.8e-16 88.6 62 59.7
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 3.7e-16 88.2 66 54.5
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 3.7e-16 88.2 62 59.7
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 4.8e-16 87.8 62 61.3
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 8.2e-16 87.0 62 59.7
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.8e-15 85.9 61 59.0
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.4e-15 85.5 61 57.4
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.1e-15 85.1 61 57.4
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.1e-15 85.1 98 42.9
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 3.1e-15 85.1 63 61.9
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 3.1e-15 85.1 91 42.9
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 3.1e-15 85.1 62 58.1
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.1e-15 85.1 93 43.0
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.3e-15 84.3 63 55.6
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.9e-15 84.0 93 43.0
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 6.9e-15 84.0 65 56.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.0e-15 83.6 62 53.2
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 9.0e-15 83.6 61 57.4
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 9.0e-15 83.6 59 59.3
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.2e-14 83.2 66 56.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.5e-14 82.8 62 56.5
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.5e-14 82.8 66 51.5
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 2.0e-14 82.4 90 42.2
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.6e-14 82.0 61 54.1
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.6e-14 82.0 62 51.6
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.6e-14 82.0 61 54.1
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.6e-14 82.0 63 57.1
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.6e-14 82.0 61 57.4
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 3.4e-14 81.6 67 53.7
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 3.4e-14 81.6 93 44.1
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.4e-14 81.6 61 54.1
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.4e-14 81.6 62 61.3
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 4.5e-14 81.3 61 59.0
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 4.5e-14 81.3 61 54.1
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 4.5e-14 81.3 59 55.9
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 5.9e-14 80.9 65 53.8
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 5.9e-14 80.9 91 42.9
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 7.7e-14 80.5 60 56.7
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 7.7e-14 80.5 60 61.7
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 7.7e-14 80.5 101 41.6
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.0e-13 80.1 63 52.4
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.0e-13 80.1 63 52.4
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 62 51.6
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 1.3e-13 79.7 62 59.7
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.3e-13 79.7 63 55.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 60 55.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 60 55.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.3e-13 79.7 60 55.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 1.7e-13 79.3 70 54.3
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.2e-13 79.0 62 54.8
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 2.2e-13 79.0 65 52.3
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.9e-13 78.6 63 47.6
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.9e-13 78.6 60 48.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.9e-13 78.6 66 47.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 6.5e-13 77.4 59 54.2
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.5e-13 77.0 62 51.6
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 8.5e-13 77.0 62 51.6
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.1e-12 76.6 63 46.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.4e-12 76.3 65 52.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.9e-12 75.9 57 57.9
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.5e-12 75.5 93 43.0
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 62 53.2
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 4.2e-12 74.7 61 50.8
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 4.2e-12 74.7 63 52.4
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 4.2e-12 74.7 59 57.6
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.2e-12 74.7 62 56.5
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 62 51.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 7.2e-12 73.9 62 56.5
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 9.4e-12 73.6 62 48.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.6e-11 72.8 62 48.4
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.6e-11 72.8 59 54.2
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.1e-11 72.4 62 48.4
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.7e-11 72.0 61 49.2
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.7e-11 72.0 64 51.6
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 3.6e-11 71.6 64 51.6
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 6.1e-11 70.9 62 50.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 7.9e-11 70.5 62 45.2
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.8e-10 69.3 55 54.5
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 1.8e-10 69.3 62 51.6
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.3e-10 68.9 65 43.1
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.3e-10 68.9 51 52.9
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 5.1e-10 67.8 64 45.3
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.1e-09 66.6 60 50.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 3.3e-09 65.1 65 43.1
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-09 65.1 65 43.1
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-09 65.1 65 43.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 3.3e-09 65.1 65 43.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 3.3e-09 65.1 65 43.1
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.3e-09 64.7 64 45.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.4e-09 63.9 64 39.1
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.3e-08 63.2 85 34.1
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.7e-08 62.8 63 39.7
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.8e-08 62.0 63 38.1
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 8.2e-08 60.5 91 33.0
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.1e-07 58.5 65 32.3
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.3e-07 57.8 60 38.3
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.1e-07 57.0 66 37.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.4e-06 55.1 59 44.1


User provided reference genes

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