Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 1.5e-262 909.1 482 100.0
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.3e-194 683.3 507 77.9
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.2e-184 650.2 509 76.4
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 6.2e-184 647.9 509 76.2
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 6.2e-152 541.6 369 81.8
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.1e-135 486.1 637 54.9
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.9e-129 466.8 626 52.6
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 5.7e-113 412.1 602 51.7
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.8e-112 409.1 610 51.0
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 4.5e-102 375.9 529 54.3
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.8e-90 335.5 611 45.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.4e-73 279.6 417 48.7
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.1e-63 248.4 423 45.4
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 2.3e-61 240.7 478 44.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.1e-52 211.8 524 38.2
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 9.3e-47 192.2 507 38.1
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 7.8e-46 189.1 498 38.4
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.5e-44 184.1 500 37.2
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.4e-42 177.6 500 37.2
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 2.9e-40 170.6 499 37.1
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 6.4e-40 169.5 499 36.9
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 4.9e-32 143.3 497 33.6
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 1.1e-31 142.1 507 34.3
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.2e-30 138.7 426 35.4
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.9e-28 131.3 542 32.5
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.3e-27 128.6 507 34.1
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 3.7e-27 127.1 448 35.7
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 4.8e-27 126.7 437 35.0
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.8e-26 124.8 455 34.7
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 4.0e-26 123.6 473 33.8
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.0e-25 121.3 457 31.5
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 3.4e-25 120.6 518 31.1
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 4.5e-25 120.2 477 31.7
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.6e-25 119.4 445 32.6
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-24 118.6 455 31.6
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.7e-24 118.2 519 31.4
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 3.8e-24 117.1 503 30.0
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.8e-24 117.1 449 31.2
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.8e-24 117.1 449 31.2
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.8e-24 117.1 449 31.2
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 3.8e-24 117.1 335 35.5
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.5e-23 114.4 299 34.1
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.2e-23 114.0 507 30.2
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 3.2e-23 114.0 446 32.3
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 9.3e-23 112.5 312 37.5
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.2e-22 112.1 649 28.8
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.6e-22 111.7 482 30.3
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.7e-22 110.9 416 33.7
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 3.5e-22 110.5 420 32.1
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 3.5e-22 110.5 540 29.8
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.3e-21 108.6 485 32.2
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.8e-21 108.2 462 30.5
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 3.0e-21 107.5 480 29.2
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 3.0e-21 107.5 396 32.1
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 5.1e-21 106.7 464 31.0
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.1e-20 105.5 463 31.1
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.1e-20 105.5 497 30.6
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.1e-20 105.5 446 30.9
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 3.3e-20 104.0 430 28.6
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 5.7e-20 103.2 446 31.6
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 5.7e-20 103.2 415 29.6
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 7.4e-20 102.8 465 31.2
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 7.4e-20 102.8 477 34.0
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 9.6e-20 102.4 495 30.1
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 9.6e-20 102.4 484 29.8
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 9.6e-20 102.4 334 32.6
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.6e-19 101.7 557 29.8
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 1.6e-19 101.7 489 30.3
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.6e-19 101.7 442 31.4
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 2.1e-19 101.3 408 30.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.8e-19 100.9 446 32.3
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.7e-19 100.5 444 28.6
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 4.8e-19 100.1 396 31.3
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 8.2e-19 99.4 437 31.1
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 1.1e-18 99.0 314 32.8
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.1e-18 99.0 379 29.8
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.1e-18 99.0 466 28.8
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.4e-18 98.6 412 30.1
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.8e-18 98.2 393 30.0
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 4.1e-18 97.1 513 30.0
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 5.3e-18 96.7 401 31.7
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 9.0e-18 95.9 374 31.0
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.5e-17 95.1 345 30.7
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 2.0e-17 94.7 258 34.5
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 2.6e-17 94.4 346 34.1
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 3.4e-17 94.0 364 31.9
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 4.5e-17 93.6 509 27.3
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 7.6e-17 92.8 439 30.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.0e-16 92.4 331 33.2
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-16 92.0 558 27.8
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.7e-16 91.7 393 29.5
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 1.7e-16 91.7 283 38.5
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.7e-16 91.7 447 31.8
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 3.8e-16 90.5 328 33.5
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 3.8e-16 90.5 527 26.6
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 5.0e-16 90.1 237 33.8
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 6.5e-16 89.7 459 30.7
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.1e-15 89.0 368 29.9
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-15 89.0 274 32.1
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.9e-15 88.2 605 26.0
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 1.9e-15 88.2 250 32.8
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 2.5e-15 87.8 266 32.3
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.5e-15 87.8 239 33.9
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 3.2e-15 87.4 307 31.3
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.2e-15 87.4 493 29.6
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.5e-15 86.7 470 29.1
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 7.2e-15 86.3 485 27.0
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 9.3e-15 85.9 331 31.4
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.6e-14 85.1 462 30.5
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.6e-14 85.1 393 29.8
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 2.7e-14 84.3 437 29.7
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 1.0e-13 82.4 451 27.3
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.0e-13 82.4 404 30.2
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.0e-13 82.4 428 29.0
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 3.0e-13 80.9 256 36.7
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.0e-13 80.9 418 30.4
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 6.7e-13 79.7 433 30.7
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 1.9e-12 78.2 304 32.6
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.5e-12 77.8 351 28.5
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 2.5e-12 77.8 366 29.8
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.5e-12 77.8 420 29.3
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 3.3e-12 77.4 389 28.5
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 3.3e-12 77.4 475 28.4
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 5.7e-12 76.6 415 30.4
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 7.4e-12 76.3 447 28.9
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 9.7e-12 75.9 313 33.2
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.3e-11 75.5 396 29.0
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 2.2e-11 74.7 367 33.0
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 4.8e-11 73.6 477 29.1
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 6.3e-11 73.2 470 28.1
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-10 72.4 494 27.3
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.1e-10 72.4 323 27.9
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.4e-10 71.2 414 29.0
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 3.1e-10 70.9 499 27.1
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 4.1e-10 70.5 474 27.8
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 4.1e-10 70.5 490 26.5
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 5.3e-10 70.1 488 29.3
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.2e-09 68.9 299 26.1
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 2.0e-09 68.2 464 27.8
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 2.6e-09 67.8 263 36.1
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 3.4e-09 67.4 513 29.0
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.0e-08 65.9 378 28.8
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.3e-08 65.5 262 31.7
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.3e-08 65.5 303 29.7
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.3e-08 65.5 263 30.0
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.8e-08 63.9 325 28.6
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 5.0e-08 63.5 298 32.2
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 6.5e-08 63.2 327 28.4
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 8.5e-08 62.8 339 30.4
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 4.2e-07 60.5 338 29.3
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.6e-06 58.5 530 27.4
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 7.9e-06 56.2 335 28.4


User provided reference genes

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