Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1840.5 937 100.0
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1699.1 938 91.9
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1693.7 963 89.9
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1693.7 963 89.9
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1685.2 963 89.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1546.9 971 83.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1512.7 964 81.5
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1511.1 964 81.4
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1493.8 973 80.3
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1481.8 977 79.8
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1481.5 964 81.3
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1476.1 964 81.2
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1469.1 978 79.9
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1455.3 977 79.4
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1451.4 978 79.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1411.0 964 78.6
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1104.0 662 87.3
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 5.7e-303 1044.3 857 62.8
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 2.6e-263 912.5 950 52.9
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 3.8e-262 908.7 955 52.9
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 2.7e-260 902.5 1037 50.4
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 2.7e-260 902.5 1007 52.4
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 3.0e-259 899.0 1021 50.7
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 4.3e-258 895.2 922 53.7
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.3e-257 893.6 1009 49.9
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 3.6e-257 892.1 993 51.6
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 4.8e-257 891.7 1011 50.8
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 8.1e-257 891.0 947 51.7
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 2.4e-256 889.4 842 55.7
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.5e-255 886.7 1030 49.9
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.4e-255 885.6 1021 49.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 5.8e-255 884.8 1044 49.0
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 8.4e-254 880.9 1044 48.8
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-253 879.8 1021 49.7
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 7.1e-253 877.9 1021 49.4
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.7e-252 875.9 1017 49.4
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 4.6e-252 875.2 1023 49.7
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 6.0e-252 874.8 1027 49.0
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 7.9e-252 874.4 984 50.5
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.7e-251 871.3 993 49.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.5e-250 869.4 968 52.4
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 3.3e-250 869.0 1021 49.6
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 4.3e-250 868.6 975 51.5
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 7.4e-250 867.8 975 51.4
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 9.6e-250 867.5 942 50.7
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 9.6e-250 867.5 967 50.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.6e-249 866.7 965 50.3
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.1e-249 866.3 995 50.4
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 6.2e-249 864.8 993 50.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.1e-248 864.0 998 51.2
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.8e-248 863.2 993 49.9
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 2.4e-248 862.8 983 50.3
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 5.3e-248 861.7 972 50.9
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 5.3e-248 861.7 1011 50.0
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.6e-247 859.4 1008 49.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 8.4e-246 854.4 963 50.5
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 4.6e-244 848.6 1037 48.4
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.3e-243 847.0 1037 48.7
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 2.3e-243 846.3 1053 49.1
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 2.5e-242 842.8 1004 48.1
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 4.8e-241 838.6 945 50.2
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 6.2e-241 838.2 984 51.0
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 6.2e-241 838.2 1011 49.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 9.0e-240 834.3 975 48.8
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 2.6e-239 832.8 872 51.5
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.4e-239 832.4 921 50.8
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.8e-239 831.6 862 52.6
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.9e-238 829.3 921 50.7
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 8.4e-238 827.8 875 51.1
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.1e-237 827.4 1038 48.4
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.4e-237 827.0 980 46.6
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 5.5e-237 825.1 1001 48.3
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 7.1e-237 824.7 1029 47.4
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.6e-236 823.5 971 49.9
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.1e-235 818.5 1018 47.0
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.4e-229 800.4 866 50.8
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.9e-229 800.0 970 48.4
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 5.5e-229 798.5 953 50.2
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.6e-228 797.0 1024 47.5
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 2.7e-228 796.2 973 48.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 4.3e-226 788.9 880 51.1
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.9e-222 776.2 1032 44.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 6.5e-222 775.0 973 47.4
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 6.7e-219 765.0 856 47.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 9.7e-218 761.1 865 49.4
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.7e-217 760.4 947 48.2
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 8.2e-217 758.1 840 49.9
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 4.1e-216 755.7 844 50.7
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 4.1e-216 755.7 858 49.7
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 2.1e-212 743.4 1035 42.9
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 3.6e-212 742.7 844 48.9
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.7e-206 723.8 849 48.3
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.2e-206 723.4 876 47.3
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 6.5e-206 721.8 1020 43.9
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 8.0e-204 714.9 842 46.7
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.4e-202 709.1 798 49.0
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-198 697.6 713 53.2
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 4.7e-196 689.1 803 49.1
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 7.2e-189 665.2 979 42.2
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.2e-185 653.7 778 48.2
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.9e-169 599.4 708 46.0
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 7.8e-167 592.0 537 55.5
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 5.6e-165 585.9 549 54.6
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.3e-163 580.5 545 54.9
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.4e-160 571.2 617 50.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.7e-143 513.8 398 64.8
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 8.7e-118 429.1 472 47.0
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.3e-110 404.4 400 53.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 2.3e-86 324.7 481 46.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.5e-72 278.1 506 38.5
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 4.1e-67 260.8 410 45.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.1e-40 172.9 327 33.0
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 9.6e-40 169.9 309 34.0
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.6e-39 167.9 327 33.0
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 6.2e-39 167.2 738 24.5
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-38 165.2 327 32.7
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-38 165.2 327 32.7
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.3e-36 159.5 158 48.1
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 4.9e-36 157.5 166 54.2
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.3e-32 144.8 193 45.1
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.8e-31 141.0 325 32.3
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-30 139.8 474 27.2
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 1.5e-24 119.4 350 32.0
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.5e-19 100.9 318 29.9
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-18 99.0 332 29.8
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.8e-13 80.9 355 24.5
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.8e-13 80.9 60 71.7
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.7e-12 79.3 111 39.6
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 4.9e-12 77.8 496 23.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.0e-09 70.1 119 30.3
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 5.1e-09 67.8 139 33.1
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 2.1e-07 62.4 188 25.0
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 3.7e-07 61.6 139 30.9
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.3e-07 60.8 88 42.0
Pp3c15_4190 Physcomitrium patens HOM05D002537 ORTHO05D002751 1.4e-06 59.7 145 29.0
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.4e-06 58.9 306 21.6
Mapoly0065s0047 Marchantia polymorpha HOM05D003725 ORTHO05D004294 4.1e-06 58.2 138 29.7
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 5.3e-06 57.8 141 28.4
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.3e-06 57.8 115 27.8
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 6.9e-06 57.4 128 35.2


User provided reference genes

Program Settings