Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 6.9e-59 230.3 109 100.0
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 1.0e-54 216.5 109 94.5
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 1.0e-54 216.5 109 94.5
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 1.0e-54 216.5 109 94.5
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 6.7e-54 213.8 109 94.5
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 3.3e-53 211.5 109 93.6
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 1.7e-52 209.1 109 89.9
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 2.0e-50 202.2 110 88.2
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 6.5e-49 197.2 110 87.3
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 3.6e-47 191.4 110 85.5
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 6.7e-46 187.2 110 84.5
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 3.1e-43 178.3 109 81.7
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 4.4e-37 157.9 110 76.4
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 1.7e-33 146.0 112 66.1
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 1.9e-32 142.5 81 85.2
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 2.5e-32 142.1 97 72.2
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 4.2e-32 141.4 81 84.0
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 1.2e-31 139.8 96 72.9
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 2.3e-30 135.6 78 83.3
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 2.3e-30 135.6 86 76.7
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 3.0e-30 135.2 82 80.5
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 4.0e-30 134.8 89 75.3
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 5.2e-30 134.4 86 73.3
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 5.2e-30 134.4 81 76.5
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 6.8e-30 134.0 84 77.4
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 1.2e-29 133.3 112 63.4
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 1.2e-29 133.3 79 75.9
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 2.0e-29 132.5 79 78.5
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 2.0e-29 132.5 109 60.6
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 2.6e-29 132.1 87 77.0
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 3.4e-29 131.7 78 76.9
Medtr0050s0180 Medicago truncatula HOM05D007196 ORTHO05D009100 3.4e-29 131.7 86 73.3
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 3.4e-29 131.7 80 75.0
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 3.4e-29 131.7 111 64.0
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 4.4e-29 131.3 85 76.5
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 4.4e-29 131.3 83 74.7
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 5.7e-29 131.0 87 73.6
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 5.7e-29 131.0 119 61.3
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 7.5e-29 130.6 83 74.7
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 9.8e-29 130.2 116 58.6
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 9.8e-29 130.2 119 58.8
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 9.8e-29 130.2 83 74.7
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 9.8e-29 130.2 74 78.4
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 9.8e-29 130.2 79 78.5
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 1.3e-28 129.8 116 60.3
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 1.3e-28 129.8 81 77.8
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 1.3e-28 129.8 74 82.4
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 2.2e-28 129.0 74 85.1
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 2.8e-28 128.6 89 70.8
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 2.8e-28 128.6 119 59.7
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 2.8e-28 128.6 111 62.2
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 3.7e-28 128.3 79 75.9
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 4.8e-28 127.9 80 76.2
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 6.3e-28 127.5 79 77.2
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 6.3e-28 127.5 80 76.2
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 6.3e-28 127.5 86 69.8
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 6.3e-28 127.5 74 83.8
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 8.3e-28 127.1 80 77.5
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 1.1e-27 126.7 99 62.6
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.1e-27 126.7 79 75.9
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 1.1e-27 126.7 79 73.4
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 1.1e-27 126.7 80 75.0
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 1.4e-27 126.3 75 80.0
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 1.8e-27 125.9 80 73.8
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.8e-27 125.9 79 77.2
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.8e-27 125.9 79 77.2
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 2.4e-27 125.6 94 64.9
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 3.1e-27 125.2 111 59.5
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 4.1e-27 124.8 80 73.8
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 5.4e-27 124.4 82 72.0
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 5.4e-27 124.4 81 75.3
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 7.0e-27 124.0 78 75.6
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 7.0e-27 124.0 75 81.3
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 7.0e-27 124.0 82 75.6
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 7.0e-27 124.0 106 63.2
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 7.0e-27 124.0 80 72.5
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 7.0e-27 124.0 112 58.9
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 9.1e-27 123.6 79 74.7
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 1.2e-26 123.2 75 80.0
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 1.2e-26 123.2 80 72.5
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 1.2e-26 123.2 76 77.6
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 1.6e-26 122.9 74 79.7
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 1.6e-26 122.9 79 70.9
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 2.0e-26 122.5 110 60.9
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 2.0e-26 122.5 79 72.2
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 2.9e-25 118.6 72 77.8
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 6.5e-25 117.5 95 64.2
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 8.6e-25 117.1 72 77.8
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 8.6e-25 117.1 75 72.0
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 2.5e-24 115.5 109 55.0
Mapoly0132s0038 Marchantia polymorpha HOM05D007196 ORTHO05D009100 5.5e-24 114.4 79 68.4
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 7.2e-24 114.0 111 55.9
SEGI_24908 Sequoiadendron giganteum HOM05D007196 ORTHO05D009100 1.2e-23 113.2 62 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3845 Anthoceros agrestis HOM05D007196 ORTHO05D009100 2.8e-23 112.1 62 79.0
AUR62023670 Chenopodium quinoa HOM05D007196 ORTHO05D001134 3.6e-23 111.7 64 82.8
Pp3c24_720 Physcomitrium patens HOM05D007196 ORTHO05D009100 2.3e-22 109.0 91 58.2
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 3.0e-22 108.6 110 49.1
Pp3c23_14000 Physcomitrium patens HOM05D007196 ORTHO05D009100 5.2e-22 107.8 91 57.1
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 8.9e-22 107.1 102 55.9
CBR_g49669 Chara braunii HOM05D007196 ORTHO05D009100 2.2e-20 102.4 106 50.9
CAN.G1135.2 Capsicum annuum HOM05D007196 ORTHO05D009100 7.0e-19 97.4 85 61.2
PGSC0003DMG400019391 Solanum tuberosum HOM05D007196 ORTHO05D009100 2.0e-18 95.9 83 59.0
Cre01.g050550 Chlamydomonas reinhardtii HOM05D007196 ORTHO05D009100 1.3e-17 93.2 61 63.9
Haze_26518 Corylus avellana HOM05D007196 ORTHO05D009100 4.4e-13 78.2 66 53.0
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 5.4e-11 71.2 52 67.3
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 5.0e-09 64.7 59 62.7
Cc05_g04470 Coffea canephora HOM05D007196 ORTHO05D009100 1.6e-07 59.7 28 89.3
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 8.0e-07 57.4 44 68.2
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 1.4e-06 56.6 47 61.7
FAN03G1444 Fragaria x ananassa HOM05D000077 ORTHO05D000981 4.0e-06 55.1 66 54.5


User provided reference genes

Program Settings