Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 1.9e-144 516.2 322 100.0
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 4.5e-122 441.8 324 90.4
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 2.2e-121 439.5 324 89.2
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 2.2e-121 439.5 324 89.2
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 2.2e-121 439.5 324 89.2
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 3.0e-118 429.1 324 88.9
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 2.4e-99 366.3 347 73.5
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 2.4e-99 366.3 347 76.7
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.2e-98 364.0 350 75.7
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 1.2e-98 364.0 385 69.9
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.9e-97 359.4 348 74.1
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 1.1e-96 357.5 347 72.9
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 2.3e-70 270.0 367 54.2
BraA02t06280Z Brassica rapa HOM05D007548 ORTHO05D009527 3.7e-52 209.5 371 56.6
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 1.1e-51 208.0 375 56.3
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 2.4e-51 206.8 375 56.3
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 4.0e-46 189.5 423 49.9
BcaB05g23992 Brassica carinata HOM05D007548 ORTHO05D009527 1.5e-45 187.6 354 53.7
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 1.9e-35 154.1 358 43.0
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 5.1e-25 119.4 354 35.6
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 7.4e-24 115.5 372 34.7
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 1.6e-23 114.4 348 35.6
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 8.1e-23 112.1 354 34.5
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 6.9e-22 109.0 325 36.6
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 1.5e-21 107.8 362 37.8
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 3.8e-20 103.2 331 35.0
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 1.1e-19 101.7 360 41.1
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 1.1e-19 101.7 306 39.5
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 3.5e-18 96.7 334 34.4
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 1.3e-17 94.7 313 36.4
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 1.8e-17 94.4 329 35.9
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 5.1e-17 92.8 323 34.7
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 1.5e-16 91.3 343 33.5
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.5e-16 91.3 343 33.5
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.5e-16 91.3 343 33.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.9e-16 90.9 346 33.8
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 9.6e-16 88.6 340 33.8
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.3e-15 88.2 335 33.1
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.3e-15 88.2 340 30.0
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 2.1e-15 87.4 302 34.1
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 3.7e-15 86.7 318 34.3
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 3.7e-15 86.7 302 33.8
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 3.7e-15 86.7 325 40.0
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.8e-14 84.3 331 32.9
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 1.8e-14 84.3 312 34.3
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 2.4e-14 84.0 311 33.1
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 4.0e-14 83.2 324 34.6
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 4.0e-14 83.2 305 33.8
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 4.5e-13 79.7 305 33.8
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 2.2e-12 77.4 343 30.3
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 6.5e-12 75.9 310 33.2
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 4.2e-11 73.2 308 31.5
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 5.5e-11 72.8 328 31.7
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 7.1e-11 72.4 322 31.4
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 9.3e-11 72.0 382 26.7
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 1.2e-10 71.6 357 32.8
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 1.6e-10 71.2 325 32.0
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 6.0e-10 69.3 126 46.0
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 7.9e-10 68.9 276 32.2
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 7.9e-10 68.9 361 31.0
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.3e-09 68.2 329 30.4
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 3.9e-09 66.6 341 32.0
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 3.9e-09 66.6 346 29.8
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 8.7e-09 65.5 336 29.5
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 1.1e-08 65.1 328 31.1
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 1.9e-08 64.3 319 32.6
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 3.3e-08 63.5 293 30.0
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 4.3e-08 63.2 176 35.8
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 5.7e-08 62.8 342 30.1
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 1.3e-07 61.6 338 29.3
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.6e-07 61.2 348 32.5
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 2.1e-07 60.8 296 29.7
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 2.1e-07 60.8 318 28.9
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 2.8e-07 60.5 143 40.6
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 6.3e-07 59.3 304 28.0
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 6.3e-07 59.3 225 43.1
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.8e-06 57.8 303 31.7
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 3.1e-06 57.0 325 31.7
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 4.1e-06 56.6 342 29.8
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 4.1e-06 56.6 350 28.9


User provided reference genes

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