Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1520.8 776 100.0
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1364.0 724 96.1
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1364.0 724 96.1
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 0.0e+00 1364.0 724 96.1
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 0.0e+00 1355.1 725 96.1
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1354.0 725 96.0
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 0.0e+00 1315.4 726 92.8
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 0.0e+00 1266.1 726 89.7
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 0.0e+00 1260.4 728 88.9
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 0.0e+00 1257.7 726 88.4
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 0.0e+00 1253.8 727 88.6
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 0.0e+00 1179.5 725 83.2
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 0.0e+00 1125.9 725 79.7
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 2.4e-278 962.2 723 66.7
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.3e-276 956.4 721 67.0
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 4.2e-275 951.4 733 65.5
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 6.7e-273 944.1 727 66.7
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 4.3e-272 941.4 724 65.9
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 5.3e-270 934.5 723 65.1
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 1.3e-268 929.9 721 65.3
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 2.9e-268 928.7 721 64.6
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 2.5e-267 925.6 722 64.3
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 3.2e-267 925.2 721 64.4
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 5.5e-267 924.5 725 64.0
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 5.5e-267 924.5 721 64.1
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 5.5e-267 924.5 721 64.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 9.4e-267 923.7 720 64.6
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 1.0e-265 920.2 722 64.5
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 2.0e-264 916.0 721 64.2
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 3.3e-264 915.2 724 64.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 5.7e-264 914.4 721 64.2
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 9.7e-264 913.7 722 64.3
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 6.3e-263 911.0 715 63.1
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 5.3e-262 907.9 721 64.5
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 1.7e-260 902.9 720 63.3
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 5.0e-260 901.4 716 63.3
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 4.2e-259 898.3 728 63.6
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 1.6e-258 896.3 726 64.0
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 4.7e-258 894.8 723 63.2
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.7e-258 894.8 723 63.2
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.0e-257 893.6 720 63.5
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 1.4e-257 893.3 694 65.1
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.8e-257 892.9 721 62.3
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 2.3e-257 892.5 724 64.0
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.0e-257 892.1 723 63.1
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 3.3e-256 888.6 724 61.6
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 3.3e-256 888.6 723 62.7
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 4.4e-256 888.3 718 63.5
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.8e-255 884.8 724 62.4
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 8.2e-255 884.0 729 63.0
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.6e-253 879.8 832 55.9
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 1.1e-251 873.6 728 61.0
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 5.5e-251 871.3 717 62.1
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 5.2e-249 864.8 723 61.5
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 6.7e-249 864.4 722 61.5
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 2.6e-248 862.4 789 58.0
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 8.2e-247 857.4 721 61.4
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.2e-245 853.6 718 60.6
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 5.2e-241 838.2 718 59.6
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.2e-240 837.0 723 59.3
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.5e-240 836.6 720 59.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 5.7e-240 834.7 721 58.7
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 9.8e-240 833.9 720 59.0
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 4.8e-239 831.6 720 60.4
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 1.1e-238 830.5 720 59.3
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 1.4e-238 830.1 714 58.4
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.6e-237 826.6 721 58.5
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 3.8e-236 822.0 715 59.3
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.8e-236 822.0 721 57.6
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.9e-235 819.7 619 65.9
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 4.2e-235 818.5 720 57.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 3.0e-233 812.4 722 58.7
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 3.0e-233 812.4 695 58.3
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 3.1e-230 802.4 721 58.4
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 2.5e-227 792.7 721 56.3
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.0e-225 787.3 723 57.0
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 6.0e-213 745.0 649 58.1
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.1e-205 719.9 725 52.4
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.1e-205 719.9 725 52.6
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.9e-198 696.8 432 81.0
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 2.4e-198 696.4 698 51.9
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 6.0e-189 665.2 664 52.3
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.1e-187 661.0 477 66.9
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.7e-183 647.1 587 57.9
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 3.5e-181 639.4 736 49.2
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 7.4e-179 631.7 392 81.4
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 5.3e-161 572.4 678 47.1
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 6.9e-161 572.0 663 46.9
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 3.9e-156 556.2 470 61.1
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.3e-153 545.8 669 44.2
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 1.1e-150 538.1 436 63.8
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.6e-149 534.3 672 43.6
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.6e-149 534.3 670 46.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.2e-141 508.1 593 46.2
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 2.9e-135 486.9 296 85.1
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.2e-134 483.4 665 42.1
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.1e-121 441.8 425 53.4
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.4e-121 440.7 503 46.7
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 3.3e-118 430.3 392 57.7
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 5.9e-112 409.5 374 55.3
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.8e-108 397.9 664 36.1
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.1e-105 388.7 479 46.6
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 4.4e-99 366.7 338 57.7
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 2.2e-98 364.4 312 64.1
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 2.8e-93 347.4 304 55.3
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.0e-91 341.3 324 58.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.1e-86 325.5 582 37.3
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.4e-81 308.5 228 69.3
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 2.1e-80 304.7 263 60.5
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 5.4e-73 280.0 236 57.6
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.1e-57 229.2 213 53.1
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.6e-56 225.3 155 74.2
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 3.3e-46 191.0 160 63.8
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 2.0e-35 155.2 148 50.7
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 4.2e-33 147.5 136 55.1
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 3.8e-26 124.4 751 24.6
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 4.1e-20 104.4 69 68.1
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 4.0e-15 87.8 66 60.6
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 8.3e-13 80.1 99 41.4


User provided reference genes

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