Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 2.3e-136 488.8 236 100.0
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 3.5e-108 395.2 208 92.3
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 3.5e-108 395.2 205 93.2
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 3.5e-108 395.2 208 92.3
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 7.8e-108 394.0 220 87.7
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 5.6e-106 387.9 208 90.4
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 7.4e-98 360.9 205 86.3
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.4e-93 346.7 205 85.4
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.9e-91 338.6 205 83.4
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 5.7e-90 334.7 206 82.5
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.8e-88 329.7 208 79.8
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 2.8e-81 305.8 205 75.6
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.4e-75 287.0 201 71.6
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.1e-69 267.3 214 65.0
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 1.4e-69 266.9 214 63.6
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.9e-69 266.5 212 63.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 3.0e-67 259.2 220 61.4
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 5.1e-67 258.5 209 62.2
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.1e-66 257.3 207 63.3
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.5e-66 256.9 213 62.9
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 1.5e-66 256.9 218 61.9
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 1.5e-66 256.9 169 71.0
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.6e-66 256.1 206 66.0
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.3e-66 255.8 211 62.6
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.4e-66 254.6 194 63.9
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.4e-66 254.6 194 63.9
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 9.7e-66 254.2 218 60.1
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 9.7e-66 254.2 221 61.1
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.3e-65 253.8 192 63.5
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.7e-65 253.4 218 60.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 2.8e-65 252.7 218 59.6
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 6.3e-65 251.5 213 62.0
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 6.3e-65 251.5 207 61.8
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 8.2e-65 251.1 208 60.1
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 8.2e-65 251.1 187 66.3
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.1e-64 250.8 215 60.9
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.8e-64 250.0 173 69.9
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 3.1e-64 249.2 215 61.9
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.5e-63 246.9 186 63.4
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 2.6e-63 246.1 160 71.2
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 2.6e-63 246.1 172 70.9
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 4.5e-63 245.4 178 64.6
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 4.5e-63 245.4 208 59.6
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 5.9e-63 245.0 216 60.2
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.0e-62 244.2 185 62.2
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.7e-62 243.4 175 66.9
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.7e-62 243.4 218 58.3
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 2.2e-62 243.0 184 65.8
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 2.9e-62 242.7 162 69.8
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 3.8e-62 242.3 193 61.7
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 5.0e-62 241.9 203 63.1
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 5.0e-62 241.9 213 60.6
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.0e-62 241.9 183 63.9
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.5e-62 241.5 178 66.9
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 6.5e-62 241.5 204 62.3
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 6.5e-62 241.5 191 62.8
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 8.5e-62 241.1 158 72.2
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 1.5e-61 240.4 213 58.2
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.5e-61 240.4 186 61.8
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.5e-61 240.4 170 71.2
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.9e-61 240.0 200 61.0
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.9e-61 240.0 232 56.9
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 3.2e-61 239.2 162 68.5
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.2e-61 239.2 188 65.4
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 3.2e-61 239.2 213 57.3
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.2e-61 238.8 164 68.9
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 5.5e-61 238.4 182 65.4
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 5.5e-61 238.4 166 68.1
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 9.4e-61 237.7 162 70.4
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 2.1e-60 236.5 209 59.3
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 3.6e-60 235.7 190 59.5
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.4e-59 233.8 178 64.6
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 1.4e-59 233.8 175 65.7
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.4e-59 233.8 188 63.3
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 2.3e-59 233.0 172 65.1
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.3e-59 233.0 162 67.9
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 3.0e-59 232.6 174 63.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 5.2e-59 231.9 212 59.0
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 6.7e-59 231.5 189 63.0
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 6.7e-59 231.5 175 62.9
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.1e-58 230.7 210 58.6
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.4e-58 228.8 215 58.6
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 5.7e-58 228.4 162 65.4
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 9.7e-58 227.6 199 61.3
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 9.7e-58 227.6 170 63.5
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.3e-57 227.3 184 63.0
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.8e-57 226.1 188 62.8
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 2.4e-56 223.0 161 67.7
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 2.4e-56 223.0 216 56.5
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.6e-55 220.3 181 59.1
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.6e-55 220.3 159 64.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 7.7e-55 218.0 157 67.5
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.8e-54 215.7 133 75.2
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 8.5e-54 214.5 146 66.4
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.1e-53 214.2 163 64.4
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 9.4e-53 211.1 178 60.1
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 8.0e-52 208.0 213 54.9
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.0e-51 207.6 203 54.2
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 2.0e-50 203.4 145 64.8
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.4e-50 202.2 124 74.2
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 4.4e-50 202.2 144 62.5
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.2e-47 194.1 202 54.0
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 2.0e-47 193.4 142 62.0
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 5.0e-46 188.7 153 63.4
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.4e-43 180.6 125 68.8
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 7.5e-42 174.9 156 48.1
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 1.3e-41 174.1 124 66.9
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.8e-38 162.5 92 87.0
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 1.9e-37 160.2 111 60.4
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-34 150.2 157 54.1
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-34 150.2 157 54.1
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 7.5e-34 148.3 122 54.1
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.2e-33 146.7 154 44.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 2.0e-31 140.2 128 46.1
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.6e-29 132.1 141 53.9
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 3.6e-28 129.4 81 74.1
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 1.5e-26 124.0 138 50.0
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 7.5e-26 121.7 137 48.9
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 1.3e-25 120.9 81 70.4
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.0e-22 111.3 87 62.1
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.3e-21 105.1 111 54.1
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.6e-20 104.0 150 32.0
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.3e-09 67.8 42 71.4
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 4.1e-08 62.8 149 29.5


User provided reference genes

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