Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1337.0 720 100.0
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 0.0e+00 1265.8 722 95.6
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 0.0e+00 1252.7 722 94.7
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1230.3 720 92.9
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 0.0e+00 1223.4 722 92.8
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 0.0e+00 1223.4 722 92.8
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 0.0e+00 1217.6 725 90.8
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 0.0e+00 1173.7 725 87.3
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 0.0e+00 1119.4 721 84.5
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 0.0e+00 1111.3 728 83.9
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 0.0e+00 1107.4 727 84.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 0.0e+00 1088.9 726 82.1
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 2.6e-287 991.9 726 75.2
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 6.0e-276 954.1 722 74.4
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 9.6e-258 893.6 728 67.7
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 3.7e-257 891.7 722 66.9
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.8e-256 889.4 723 66.8
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 1.1e-253 880.2 722 66.8
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 8.7e-251 870.5 723 65.6
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 1.5e-250 869.8 719 65.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 6.3e-249 864.4 721 66.2
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 2.6e-247 859.0 719 66.1
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 3.4e-247 858.6 695 67.3
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.5e-245 852.4 719 65.1
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.7e-244 849.0 721 64.8
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.0e-243 847.0 723 66.0
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.9e-242 842.8 726 64.0
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 2.2e-241 839.3 809 59.5
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.6e-239 832.4 749 62.2
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.3e-238 830.1 727 63.4
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 9.4e-237 823.9 723 64.7
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 1.2e-236 823.5 724 64.2
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.6e-236 823.2 723 62.5
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 4.6e-236 821.6 729 63.5
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 7.9e-236 820.8 718 63.2
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 6.7e-235 817.8 727 62.9
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.3e-234 815.5 728 63.9
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.3e-234 815.5 729 63.6
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 4.4e-234 815.1 731 62.8
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 5.7e-234 814.7 724 62.4
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 7.4e-234 814.3 721 63.7
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 1.7e-233 813.1 692 64.7
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.3e-233 811.2 720 62.9
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.1e-232 810.4 720 62.9
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.4e-232 810.1 724 63.4
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.8e-232 809.7 723 62.7
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 3.1e-232 808.9 722 63.7
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 7.7e-231 804.3 746 62.1
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 2.9e-230 802.4 724 62.2
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 2.9e-230 802.4 724 63.4
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.9e-229 799.7 669 67.3
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.0e-227 793.9 721 62.6
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 5.2e-227 791.6 727 60.9
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 4.8e-225 785.0 720 61.8
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 8.2e-225 784.3 719 61.6
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.8e-224 783.1 734 60.6
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.4e-224 782.7 723 60.7
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.5e-223 778.9 710 61.0
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 3.5e-223 778.9 702 61.8
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 2.2e-222 776.2 719 61.1
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.0e-222 775.0 720 60.3
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 6.5e-222 774.6 722 59.6
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 1.1e-221 773.9 728 59.8
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 3.2e-221 772.3 724 60.8
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 9.4e-221 770.8 719 60.5
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.1e-216 757.3 722 58.4
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.1e-216 755.7 792 57.2
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 3.5e-215 752.3 736 57.2
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 7.7e-215 751.1 808 55.1
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.8e-214 748.8 735 58.4
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.2e-212 743.8 696 60.5
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 6.1e-212 741.5 728 58.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 8.0e-212 741.1 707 59.5
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 4.4e-210 735.3 692 61.0
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.2e-202 710.7 728 58.2
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.4e-200 703.7 742 55.8
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 9.2e-200 701.0 660 61.5
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.0e-199 699.9 723 58.0
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.1e-197 694.1 723 56.0
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 2.5e-197 693.0 693 56.0
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 9.5e-197 691.0 722 55.3
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.1e-192 677.6 670 56.9
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 1.2e-191 674.1 722 55.7
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 3.5e-191 672.5 694 55.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 9.5e-189 664.5 722 54.0
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 4.4e-186 655.6 770 50.8
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 2.2e-177 626.7 726 51.1
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 6.2e-172 608.6 730 49.6
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 7.3e-165 585.1 672 52.1
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.8e-163 580.5 720 49.3
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.3e-161 574.3 594 57.4
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 7.4e-141 505.4 575 52.0
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.8e-139 500.7 357 73.7
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.4e-131 473.8 549 52.1
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 9.4e-128 461.8 581 50.6
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.5e-125 454.5 361 67.9
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.7e-124 451.1 424 59.9
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.2e-120 435.6 298 75.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 5.0e-113 412.9 424 57.3
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.9e-104 384.4 265 74.7
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 5.9e-98 362.8 374 57.8
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.8e-86 324.7 701 33.8
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 7.0e-83 312.8 343 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.7e-81 308.1 734 33.0
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 3.9e-81 307.0 664 31.8
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 5.2e-78 296.6 443 43.6
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.7e-73 281.6 372 49.5
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.4e-70 271.9 504 40.9
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.5e-66 257.3 704 28.8
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 6.0e-66 256.5 272 53.7
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 4.3e-64 250.4 741 27.9
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 3.1e-62 244.2 438 41.3
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 6.2e-31 140.2 138 56.5
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.9e-26 123.2 82 68.3
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.7e-25 119.8 142 49.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.5e-24 118.2 510 23.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.0e-21 108.6 124 49.2
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 7.6e-21 106.7 188 40.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.5e-19 101.7 143 44.1
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.0e-17 94.7 152 40.1
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 5.1e-17 94.0 95 49.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.4e-16 90.1 55 83.6
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 4.8e-15 87.4 103 51.5
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 4.8e-15 87.4 165 35.8
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 4.1e-14 84.3 115 39.1
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.7e-12 79.0 55 70.9
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.5e-11 75.1 140 37.1
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 3.6e-10 71.2 68 51.5
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.4e-09 69.3 93 43.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 5.1e-09 67.4 107 43.9
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.8e-07 60.8 41 73.2


User provided reference genes

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