Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-42 175.6 83 100.0
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.1e-31 138.7 71 91.5
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.6e-31 137.9 71 91.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.8e-30 135.6 72 91.7
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.8e-30 135.6 71 88.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.5e-29 132.5 71 87.3
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.6e-29 131.7 71 84.5
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-29 131.7 71 85.9
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.3e-29 131.3 69 89.9
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.4e-29 131.0 71 85.9
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-28 128.3 70 87.1
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 4.8e-28 127.5 71 81.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.8e-28 127.5 71 81.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.8e-28 127.5 71 81.7
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.8e-28 127.5 69 88.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.4e-27 125.2 71 81.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 9.1e-27 123.2 71 78.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 5.9e-26 120.6 71 78.9
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 7.7e-26 120.2 71 78.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.0e-25 119.8 71 77.5
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.0e-25 119.8 71 77.5
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.0e-25 119.8 71 77.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.7e-25 119.0 71 76.1
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.2e-25 118.6 71 76.1
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.2e-24 114.4 75 74.7
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.1e-23 112.1 72 73.6
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 3.6e-23 111.3 72 73.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 6.1e-23 110.5 71 70.4
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.8e-22 109.0 71 67.6
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.8e-22 109.0 71 67.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.8e-22 109.0 71 69.0
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.0e-22 107.8 56 89.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 5.2e-22 107.5 71 67.6
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.7e-22 107.1 71 70.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 8.8e-22 106.7 72 69.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.5e-21 105.9 71 64.8
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.0e-21 105.5 71 67.6
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.0e-21 105.5 71 67.6
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.0e-21 105.5 71 67.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.6e-21 105.1 71 64.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.3e-21 104.8 71 66.2
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.3e-21 104.8 72 68.1
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 4.4e-21 104.4 71 64.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.4e-21 104.4 71 66.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 4.4e-21 104.4 72 66.7
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 4.4e-21 104.4 72 69.4
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 7.5e-21 103.6 72 65.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 9.7e-21 103.2 71 66.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.3e-20 102.8 75 64.0
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-20 102.8 71 63.4
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-20 102.8 71 63.4
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.3e-20 102.8 75 61.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.7e-20 102.4 70 62.9
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.2e-20 102.1 71 66.2
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.8e-20 101.7 72 66.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.8e-20 101.7 71 66.2
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 3.7e-20 101.3 71 64.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.7e-20 101.3 71 63.4
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.7e-20 101.3 71 64.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 6.3e-20 100.5 71 64.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.2e-20 100.1 71 63.4
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.1e-19 99.8 72 66.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.1e-19 99.8 72 63.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.1e-19 99.8 77 61.0
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.8e-19 99.0 71 62.0
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.8e-19 99.0 71 62.0
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.8e-19 99.0 72 66.7
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.4e-19 98.6 72 65.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.4e-19 98.6 69 60.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.1e-19 97.8 71 62.0
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 7.0e-19 97.1 72 63.9
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 7.0e-19 97.1 72 62.5
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 9.1e-19 96.7 71 59.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-18 96.3 71 63.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.2e-18 96.3 71 62.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.5e-18 94.7 72 61.1
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.5e-18 94.7 71 62.0
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 4.5e-18 94.4 71 60.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 7.7e-18 93.6 72 59.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.3e-17 92.8 59 71.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.3e-17 92.8 72 61.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-17 92.0 72 58.3
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.2e-17 92.0 70 64.3
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.9e-17 91.7 72 59.7
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 5.0e-17 90.9 72 62.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 5.0e-17 90.9 70 62.9
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 6.5e-17 90.5 71 57.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.1e-16 89.7 72 55.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.1e-16 89.7 71 59.2
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.5e-16 89.4 69 60.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.5e-16 89.4 75 53.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.5e-16 88.6 51 78.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 2.5e-16 88.6 72 55.6
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.5e-16 87.4 72 56.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 7.2e-16 87.0 73 64.4
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 9.4e-16 86.7 72 56.9
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.2e-15 86.3 54 70.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.2e-15 86.3 70 55.7
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.2e-15 86.3 71 54.9
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.6e-15 85.9 72 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.1e-15 85.5 72 59.7
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.7e-15 84.3 71 53.5
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.7e-15 84.3 75 56.0
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.1e-15 84.0 56 66.1
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.4e-14 82.8 73 61.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.8e-14 82.4 72 56.9
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.8e-14 82.4 73 61.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-14 82.0 69 53.6
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.0e-14 81.3 73 53.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.2e-14 80.9 71 54.9
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.2e-13 79.7 70 55.7
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.2e-13 79.7 71 54.9
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.5e-13 79.3 79 55.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.5e-13 79.3 58 63.8
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.6e-13 78.6 70 57.1
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.4e-13 78.2 71 54.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 3.4e-13 78.2 71 53.5
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 5.7e-13 77.4 71 53.5
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 5.7e-13 77.4 71 53.5
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-12 75.9 72 52.8
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-12 75.9 72 52.8
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.7e-12 75.9 66 60.6
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.2e-12 75.5 47 74.5
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-11 73.2 66 56.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.4e-11 70.9 54 59.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 7.0e-11 70.5 49 71.4
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 7.0e-11 70.5 71 49.3
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 9.1e-11 70.1 72 44.4
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.0e-09 66.6 66 50.0
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.3e-09 66.2 71 53.5
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.3e-09 66.2 62 54.8
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 1.7e-09 65.9 32 96.9
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 1.4e-06 56.2 37 62.2
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.8e-06 55.8 73 35.6


User provided reference genes

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