Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 2.6e-116 422.2 227 100.0
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 3.7e-107 391.7 231 94.8
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 3.7e-107 391.7 231 94.8
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 9.2e-106 387.1 235 93.2
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 4.6e-105 384.8 233 93.6
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 2.5e-103 379.0 224 94.6
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 9.9e-100 367.1 231 89.2
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 3.3e-95 352.1 229 84.7
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 9.0e-85 317.4 235 78.3
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 1.1e-82 310.5 228 78.1
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 3.0e-80 302.4 237 76.8
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 8.7e-80 300.8 169 95.3
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 1.5e-76 290.0 220 73.6
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 9.0e-69 264.2 177 80.2
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.5e-68 263.5 232 65.1
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.5e-60 236.9 226 57.1
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 2.0e-60 236.5 214 61.7
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 7.7e-60 234.6 193 65.3
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 1.7e-59 233.4 203 63.1
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 2.9e-59 232.6 203 61.6
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 2.5e-58 229.6 228 57.9
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 9.4e-58 227.6 206 59.7
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 9.4e-58 227.6 195 63.6
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 1.2e-57 227.3 195 64.1
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 1.6e-57 226.9 210 59.0
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 2.7e-57 226.1 208 59.1
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 4.6e-57 225.3 204 59.8
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 6.1e-57 224.9 194 63.9
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 6.1e-57 224.9 229 54.1
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 7.9e-57 224.6 218 57.8
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 7.9e-57 224.6 239 55.6
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.0e-56 224.2 227 57.3
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 1.4e-56 223.8 173 68.8
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 1.4e-56 223.8 231 56.3
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 1.4e-56 223.8 208 62.0
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 1.4e-56 223.8 213 60.1
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 1.8e-56 223.4 235 56.6
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.8e-56 223.4 235 57.4
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.3e-56 223.0 205 61.0
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.3e-56 223.0 235 56.6
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.0e-56 222.6 235 55.7
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 5.1e-56 221.9 175 66.3
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 5.1e-56 221.9 175 63.4
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 1.1e-55 220.7 209 60.3
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 3.3e-55 219.2 216 57.9
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 4.3e-55 218.8 232 54.7
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 5.7e-55 218.4 203 59.1
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 7.4e-55 218.0 192 59.9
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 1.3e-54 217.2 177 63.8
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 2.2e-54 216.5 203 59.6
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 2.2e-54 216.5 212 56.6
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 3.7e-54 215.7 194 60.3
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 4.8e-54 215.3 196 61.2
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 1.8e-53 213.4 195 56.4
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 3.1e-53 212.6 195 59.0
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 4.1e-53 212.2 191 60.2
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 6.9e-53 211.5 212 56.1
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 1.5e-52 210.3 216 53.7
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 2.0e-52 209.9 207 54.6
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 3.4e-52 209.1 227 53.3
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 4.5e-52 208.8 216 53.7
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 5.9e-52 208.4 215 54.0
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 7.7e-52 208.0 194 55.7
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 7.7e-52 208.0 194 57.7
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 1.0e-51 207.6 231 51.9
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 1.7e-51 206.8 216 50.9
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 2.2e-51 206.5 236 51.3
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 2.9e-51 206.1 221 52.9
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 6.5e-51 204.9 216 53.2
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 8.5e-51 204.5 205 55.6
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 1.1e-50 204.1 205 56.1
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.4e-50 203.8 229 51.5
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 3.2e-50 202.6 228 51.8
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 9.4e-50 201.1 174 61.5
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 9.4e-50 201.1 215 53.5
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.6e-49 200.3 238 49.2
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 4.7e-49 198.7 194 55.7
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 7.9e-49 198.0 253 47.8
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.4e-48 197.2 215 52.6
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.8e-48 196.8 195 57.9
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 3.0e-48 196.1 201 54.7
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 3.9e-48 195.7 238 48.3
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 5.1e-48 195.3 207 55.6
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 9.7e-47 191.0 200 55.0
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 1.1e-45 187.6 221 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 7.2e-42 174.9 170 53.5
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 6.1e-41 171.8 163 57.1
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 8.0e-41 171.4 162 56.8
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.4e-40 170.6 134 67.2
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 1.4e-40 170.6 173 51.4
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 2.6e-36 156.4 224 43.8
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 1.3e-35 154.1 154 52.6
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 9.4e-34 147.9 214 43.9
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 3.0e-32 142.9 147 53.1
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 9.1e-29 131.3 343 35.0
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.2e-28 131.0 159 47.2
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 5.9e-28 128.6 103 64.1
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 8.5e-27 124.8 169 37.9
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 6.8e-24 115.2 104 59.6
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 6.8e-24 115.2 104 59.6
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.3e-14 84.3 62 71.0
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 1.1e-13 81.3 170 32.9
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 5.6e-10 68.9 176 30.7
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.2e-07 61.2 73 52.1


User provided reference genes

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