Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.6e-310 1068.5 543 100.0
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-263 912.5 551 86.6
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.0e-260 902.1 547 85.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 6.6e-259 897.1 547 86.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.5e-258 895.2 548 85.9
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 3.1e-256 888.3 543 83.2
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.5e-255 883.6 547 83.2
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.2e-253 876.7 548 83.0
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.2e-252 876.3 548 82.8
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.6e-252 875.9 547 82.6
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-244 848.6 548 83.0
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.7e-243 845.9 547 78.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 8.6e-243 843.6 547 79.5
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.9e-242 842.4 548 79.2
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 7.3e-242 840.5 514 85.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.8e-241 838.6 550 78.7
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 8.1e-225 783.9 492 79.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.2e-222 775.8 550 75.3
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.3e-211 739.2 550 70.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.1e-178 630.6 558 61.5
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.6e-175 619.4 563 59.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 5.9e-175 618.2 557 60.7
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.7e-175 617.8 548 60.2
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.3e-174 617.1 558 60.0
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.5e-173 613.6 555 61.3
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 9.4e-173 610.9 559 59.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.7e-172 609.4 563 58.4
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.7e-172 609.4 563 59.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 6.7e-171 604.7 552 58.5
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.0e-170 603.2 562 58.0
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.3e-170 602.4 558 58.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 4.4e-170 602.1 549 59.2
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.3e-169 600.5 551 60.3
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.7e-169 600.1 561 58.5
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 8.2e-169 597.8 566 59.0
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 8.2e-169 597.8 556 58.5
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-168 597.4 567 57.0
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.1e-168 595.5 560 59.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.2e-166 589.7 552 57.2
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.9e-166 589.3 563 57.2
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.5e-165 586.3 565 56.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 4.2e-165 585.5 560 56.4
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.6e-164 583.6 553 58.2
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.8e-163 580.1 549 57.4
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.8e-163 580.1 555 57.1
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 5.2e-163 578.6 556 58.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.8e-163 577.8 543 57.1
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.2e-162 577.4 555 57.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.6e-162 576.2 555 57.5
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 7.5e-162 574.7 549 57.6
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 7.5e-162 574.7 556 57.2
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.3e-161 573.9 541 56.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.3e-161 573.9 558 55.7
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.8e-161 572.0 558 56.6
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.0e-160 568.2 556 56.5
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.7e-159 566.2 560 57.5
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.9e-159 565.1 552 55.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 3.2e-157 559.3 528 57.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 3.2e-157 559.3 558 56.8
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 5.5e-157 558.5 540 54.1
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.4e-155 553.9 549 55.6
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.3e-155 553.1 564 55.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.0e-155 552.7 566 54.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 3.0e-155 552.7 545 54.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.0e-155 552.4 548 54.6
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.0e-154 550.1 545 54.9
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.7e-153 547.0 551 54.4
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.8e-153 546.2 563 53.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.9e-153 545.4 574 54.4
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.4e-152 542.0 575 54.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.2e-151 540.8 554 54.3
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.0e-151 540.0 554 53.8
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.5e-151 539.3 555 52.6
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 4.5e-151 538.9 563 54.2
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.3e-150 537.3 575 53.6
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.7e-150 537.0 554 54.3
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.3e-150 536.6 551 55.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.5e-149 533.9 552 53.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.5e-149 533.1 557 53.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 3.3e-149 532.7 543 54.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.5e-149 531.9 611 50.2
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.2e-148 530.8 562 53.0
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.6e-148 530.4 556 53.1
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 3.6e-148 529.3 547 52.1
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 4.7e-148 528.9 548 53.1
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 8.9e-147 524.6 570 52.6
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.2e-145 520.0 562 52.8
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.4e-144 515.4 557 53.1
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 5.4e-144 515.4 484 55.6
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.9e-143 511.9 542 51.7
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.7e-142 510.4 575 51.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-140 504.2 485 54.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.2e-140 504.2 591 48.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 2.6e-138 496.5 579 48.4
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 9.8e-138 494.6 565 50.1
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 8.3e-137 491.5 629 47.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.4e-136 490.7 553 50.1
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.4e-136 488.8 500 53.8
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.4e-136 488.8 551 49.5
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.9e-134 482.6 488 54.9
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 7.3e-133 478.4 610 45.1
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.1e-131 474.6 469 52.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.0e-131 472.6 558 47.8
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 5.2e-131 472.2 501 53.1
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.2e-129 466.8 532 52.3
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.7e-129 466.1 549 46.8
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.7e-129 466.1 568 47.9
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-127 461.1 517 48.9
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.6e-127 459.1 468 51.1
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-126 458.0 509 48.5
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.7e-126 457.2 515 49.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 5.6e-125 452.2 495 49.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.2e-124 448.7 560 47.9
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.6e-119 432.6 467 54.4
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.5e-117 427.6 556 47.3
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 6.4e-113 412.1 548 45.4
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.1e-111 407.1 516 44.6
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.6e-108 397.5 461 51.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.1e-107 394.8 444 49.5
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-107 392.5 591 39.8
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-107 392.5 591 39.8
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-106 390.6 579 39.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.6e-103 379.4 583 38.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.9e-103 378.6 502 45.2
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-102 377.1 517 41.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.4e-99 367.9 330 58.8
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 5.3e-99 365.9 496 41.1
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 6.2e-92 342.4 552 40.2
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 3.4e-90 336.7 329 57.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.6e-84 317.8 358 49.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 2.0e-82 310.8 472 44.3
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.9e-73 280.4 703 30.4
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.5e-73 279.3 584 33.9
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-70 271.6 644 33.1
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.5e-69 267.3 166 72.3
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 4.3e-69 266.5 168 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.8e-67 261.2 463 38.2
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 8.8e-62 242.3 392 43.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 5.7e-53 213.0 255 50.2
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 8.8e-46 189.1 197 55.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.1e-43 180.6 189 47.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 6.5e-41 172.9 162 60.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.4e-38 165.2 275 41.1
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.1e-35 153.7 175 53.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 7.0e-35 152.9 99 65.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.7e-34 151.0 167 50.9
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 7.7e-34 149.4 142 59.9
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.8e-30 136.3 159 50.9
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.4e-27 128.6 146 51.4
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.4e-27 126.7 94 68.1
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.0e-22 112.5 180 36.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 3.7e-20 104.0 166 34.3
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 3.9e-17 94.0 68 61.8
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.2e-15 89.0 105 52.4
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 5.2e-14 83.6 104 42.3
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 9.2e-11 72.8 39 82.1
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 1.1e-06 59.3 115 35.7
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 4.0e-06 57.4 77 41.6


User provided reference genes

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