Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35211 Brassica carinata HOM05D002324 ORTHO05D002380 6.4e-55 217.2 114 100.0
BcaB05g24613 Brassica carinata HOM05D005982 ORTHO05D094193 1.1e-19 100.1 82 70.7
A01p00980 Brassica napus HOM05D002324 ORTHO05D002380 5.4e-14 81.3 58 72.4
C01p01100 Brassica napus HOM05D002324 ORTHO05D002380 5.4e-14 81.3 58 72.4
BolC1t00108H Brassica oleracea HOM05D002324 ORTHO05D002380 5.4e-14 81.3 58 72.4
BraA01t00096Z Brassica rapa HOM05D002324 ORTHO05D002380 5.4e-14 81.3 58 72.4
CARHR246600 Cardamine hirsuta HOM05D002324 ORTHO05D002380 7.1e-14 80.9 58 72.4
BcaNung00936 Brassica carinata HOM05D002324 ORTHO05D002380 9.3e-14 80.5 58 72.4
AL7G12400 Arabidopsis lyrata HOM05D002324 ORTHO05D002380 3.5e-13 78.6 58 70.7
Sp7g35800 Schrenkiella parvula HOM05D002324 ORTHO05D002380 7.9e-13 77.4 52 73.1
Thhalv10024726m.g Eutrema salsugineum HOM05D002324 ORTHO05D002380 5.1e-12 74.7 58 63.8
Carub.0007s0204 Capsella rubella HOM05D002324 ORTHO05D002380 6.7e-12 74.3 58 65.5
Aa31LG6G15160 Aethionema arabicum HOM05D002324 ORTHO05D002380 3.3e-11 72.0 48 70.8
THA.LOC104824891 Tarenaya hassleriana HOM05D002324 ORTHO05D002380 1.3e-10 70.1 48 70.8
AT4G40050 Arabidopsis thaliana HOM05D002324 ORTHO05D002380 2.8e-10 68.9 58 62.1
COL.COLO4_27293 Corchorus olitorius HOM05D002324 ORTHO05D002380 1.2e-08 63.5 48 64.6
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.2e-08 63.5 48 64.6
Thecc.01G095800 Theobroma cacao HOM05D002324 ORTHO05D002380 1.2e-08 63.5 48 64.6
Duzib147G0146 Durio zibethinus HOM05D002324 ORTHO05D002380 2.0e-08 62.8 48 64.6
Prupe.6G192800 Prunus persica HOM05D002324 ORTHO05D002380 3.4e-08 62.0 48 62.5
FvH4_1g20260 Fragaria vesca HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
FAN23G0474 Fragaria x ananassa HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
FAN26G0626 Fragaria x ananassa HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
Gohir.A11G205450 Gossypium hirsutum HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
Gorai.007G234900 Gossypium raimondii HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
Potri.005G072200 Populus trichocarpa HOM05D002324 ORTHO05D002380 7.6e-08 60.8 48 62.5
FAN28G1243 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.7e-07 59.7 48 62.5
Lj4g0007489 Lotus japonicus HOM05D002324 ORTHO05D002380 1.7e-07 59.7 48 60.4
MD15G1320400 Malus domestica HOM05D002324 ORTHO05D002380 1.7e-07 59.7 48 60.4
Manes.13G096500 Manihot esculenta HOM05D002324 ORTHO05D002380 1.7e-07 59.7 48 60.4
Ah.03g141980 Amaranthus hybridus HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
Ca_17761_v3 Cicer arietinum L. HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
Gohir.D12G082400 Gossypium hirsutum HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
Gorai.008G090600 Gossypium raimondii HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
MD01G1035400 Malus domestica HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
Medtr8g089935 Medicago truncatula HOM05D002324 ORTHO05D002380 4.9e-07 58.2 48 58.3
arahy.Tifrunner.gnm1.ann1.D9ZPCT Arachis hypogaea HOM05D002324 ORTHO05D002380 6.4e-07 57.8 48 56.2
arahy.Tifrunner.gnm1.ann1.ER7UN0 Arachis hypogaea HOM05D002324 ORTHO05D002380 6.4e-07 57.8 48 56.2
RcHm_v2.0_Chr2g0112401 Rosa chinensis HOM05D002324 ORTHO05D002380 6.4e-07 57.8 48 58.3
TWI74G0703 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 6.4e-07 57.8 48 62.5
Gohir.D11G219000 Gossypium hirsutum HOM05D002324 ORTHO05D002380 8.4e-07 57.4 48 60.4
Duzib187G0684 Durio zibethinus HOM05D002324 ORTHO05D002380 1.1e-06 57.0 48 56.2
TWI53G1112 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 1.1e-06 57.0 48 60.4
Oeu002160.1 Olea europaea HOM05D002324 ORTHO05D002380 1.4e-06 56.6 48 56.2
TPR.G6279 Trifolium pratense HOM05D002324 ORTHO05D002380 1.4e-06 56.6 59 47.5
VMungo0251G0900 Vigna mungo HOM05D002324 ORTHO05D002380 1.4e-06 56.6 48 56.2
Ciclev10025207m.g Citrus clementina HOM05D002324 ORTHO05D002380 1.9e-06 56.2 48 54.2
Gohir.A12G083600 Gossypium hirsutum HOM05D002324 ORTHO05D002380 1.9e-06 56.2 48 56.2
Hund16556 Selenicereus undatus HOM05D002324 ORTHO05D002380 1.9e-06 56.2 48 58.3
CANSAT01G1194 Cannabis sativa HOM05D002324 ORTHO05D002380 2.4e-06 55.8 58 46.6
HPP92_016365 Vanilla planifolia HOM05D002324 ORTHO05D002380 2.4e-06 55.8 48 52.1
MSTRG.2584 Avicennia marina HOM05D002324 ORTHO05D002380 3.2e-06 55.5 48 54.2
CiPaw.03G145500 Carya illinoinensis HOM05D002324 ORTHO05D002380 3.2e-06 55.5 59 49.2
Lalb_Chr07g0185311 Lupinus albus HOM05D002324 ORTHO05D002380 3.2e-06 55.5 48 54.2
PSO541G0684 Papaver somniferum HOM05D002324 ORTHO05D002380 3.2e-06 55.5 48 56.2
PSO675G5704 Papaver somniferum HOM05D002324 ORTHO05D002380 3.2e-06 55.5 48 56.2
DCAR_003469 Daucus carota HOM05D002324 ORTHO05D002380 4.2e-06 55.1 48 54.2
Cpa.g.sc55.76 Carica papaya HOM05D002324 ORTHO05D002380 5.5e-06 54.7 48 58.3
Phvul.002G261000 Phaseolus vulgaris HOM05D002324 ORTHO05D002380 5.5e-06 54.7 123 35.0
RcHm_v2.0_Chr1g0337201 Rosa chinensis HOM05D002324 ORTHO05D002380 5.5e-06 54.7 48 52.1
Dinv08861 Davidia involucrata HOM05D002324 ORTHO05D002380 7.1e-06 54.3 48 54.2
Lj4C899G10 Lonicera japonica HOM05D002324 ORTHO05D002380 7.1e-06 54.3 58 50.0
Lalb_Chr12g0203971 Lupinus albus HOM05D002324 ORTHO05D002380 7.1e-06 54.3 48 56.2
Psat7g056480 Pisum sativum HOM05D002324 ORTHO05D002380 7.1e-06 54.3 48 54.2
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 54.2
Cfa002602 Carpinus fangiana HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 54.2
AUR62003262 Chenopodium quinoa HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 52.1
AUR62027206 Chenopodium quinoa HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 52.1
Haze_24853 Corylus avellana HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 54.2
Eucgr.I00536 Eucalyptus grandis HOM05D002324 ORTHO05D002380 9.3e-06 53.9 48 52.1


User provided reference genes

Program Settings