Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 5.4e-44 180.6 93 100.0
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 1.4e-28 129.4 93 78.5
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 1.4e-28 129.4 93 78.5
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 1.4e-28 129.4 93 78.5
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 1.4e-28 129.4 93 78.5
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 1.4e-28 129.4 93 78.5
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 3.2e-28 128.3 91 78.0
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 4.1e-28 127.9 93 76.3
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 3.5e-27 124.8 94 77.7
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 3.5e-27 124.8 94 77.7
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 3.5e-27 124.8 94 77.7
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 3.5e-27 124.8 94 77.7
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 3.5e-27 124.8 94 77.7
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 3.9e-26 121.3 93 72.0
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 3.9e-26 121.3 93 72.0
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 5.1e-26 120.9 93 72.0
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 5.1e-26 120.9 93 72.0
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 6.6e-26 120.6 95 74.7
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 6.6e-26 120.6 95 74.7
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 8.6e-26 120.2 93 69.9
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 1.1e-25 119.8 93 71.0
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 1.1e-25 119.8 93 72.0
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 1.5e-25 119.4 92 70.7
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 1.9e-25 119.0 93 69.9
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 1.9e-25 119.0 93 69.9
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 2.5e-25 118.6 91 71.4
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 69.9
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 2.5e-25 118.6 93 71.0
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 71.0
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 69.9
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 3.3e-25 118.2 90 72.2
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 69.9
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 69.9
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 69.9
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 68.8
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 3.3e-25 118.2 90 71.1
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 3.3e-25 118.2 93 71.0
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 4.3e-25 117.9 90 72.2
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 4.3e-25 117.9 93 69.9
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 4.3e-25 117.9 93 69.9
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 4.3e-25 117.9 93 71.0
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 5.6e-25 117.5 93 68.8
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 5.6e-25 117.5 90 70.0
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 5.6e-25 117.5 93 69.9
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 5.6e-25 117.5 90 71.1
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 7.3e-25 117.1 90 70.0
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 7.3e-25 117.1 91 69.2
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 7.3e-25 117.1 91 69.2
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 9.5e-25 116.7 93 68.8
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 9.5e-25 116.7 91 68.1
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 1.2e-24 116.3 93 68.8
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.2e-24 116.3 93 68.8
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.2e-24 116.3 93 68.8
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 1.2e-24 116.3 91 69.2
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.2e-24 116.3 91 69.2
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.2e-24 116.3 91 69.2
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.2e-24 116.3 91 69.2
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 1.2e-24 116.3 91 69.2
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 1.6e-24 115.9 95 69.5
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.6e-24 115.9 90 70.0
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.6e-24 115.9 90 70.0
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.6e-24 115.9 93 67.7
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 2.8e-24 115.2 93 67.7
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 2.8e-24 115.2 93 68.8
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 2.8e-24 115.2 93 68.8
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 2.8e-24 115.2 91 68.1
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 2.8e-24 115.2 93 68.8
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 3.6e-24 114.8 90 70.0
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 3.6e-24 114.8 93 68.8
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 1.1e-23 113.2 90 68.9
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 1.1e-23 113.2 90 68.9
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 1.4e-23 112.8 91 70.3
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 2.6e-22 108.6 93 63.4
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 5.8e-22 107.5 84 71.4
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 7.6e-22 107.1 99 60.6
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 4.9e-21 104.4 79 74.7
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 1.1e-20 103.2 92 63.0
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 1.1e-20 103.2 92 63.0
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 4.1e-20 101.3 90 61.1
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 5.4e-20 100.9 90 60.0
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 1.3e-18 96.3 79 68.4
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.3e-18 96.3 79 67.1
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 2.3e-18 95.5 80 62.5
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 3.0e-18 95.1 85 62.4
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 8.6e-18 93.6 82 61.0
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 1.5e-17 92.8 90 58.9
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 1.5e-17 92.8 90 58.9
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 1.5e-17 92.8 90 58.9
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 2.5e-17 92.0 80 63.8
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 2.5e-17 92.0 90 58.9
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 5.6e-17 90.9 90 57.8
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 1.2e-16 89.7 60 80.0
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.6e-16 89.4 90 56.7
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 4.7e-16 87.8 92 56.5
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 1.1e-15 86.7 93 53.8
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 1.4e-15 86.3 53 83.0
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 4.9e-13 77.8 47 80.9
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 1.4e-12 76.3 83 56.6
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 1.9e-12 75.9 44 79.5
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 2.4e-12 75.5 83 50.6
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 4.2e-12 74.7 90 51.1
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 7.1e-12 73.9 79 53.2
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 3.3e-09 65.1 76 48.7
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.5e-06 56.2 33 78.8


User provided reference genes

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