Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-42 173.3 88 100.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 2.8e-10 68.6 43 76.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 4.8e-10 67.8 43 76.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 4.8e-10 67.8 43 76.7
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 4.8e-10 67.8 43 76.7
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-09 66.6 43 74.4
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-09 66.2 43 72.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-09 66.2 43 74.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-09 66.2 43 72.1
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-09 66.2 43 72.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.4e-09 66.2 43 72.1
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-09 65.9 43 74.4
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.1e-09 65.1 43 74.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 4.1e-09 64.7 43 69.8
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.1e-09 64.7 43 69.8
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 4.1e-09 64.7 43 72.1
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-09 64.3 43 72.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.3e-09 64.3 43 74.4
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 9.1e-09 63.5 43 69.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.5e-08 62.8 43 69.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 2.0e-08 62.4 43 69.8
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.6e-08 62.0 43 69.8
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.6e-08 62.0 43 69.8
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.6e-08 62.0 43 69.8
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.5e-08 61.2 43 67.4
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.7e-08 60.5 43 65.1
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.7e-08 60.5 43 65.1
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 7.7e-08 60.5 43 65.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 7.7e-08 60.5 43 67.4
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 7.7e-08 60.5 43 62.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.0e-07 60.1 43 65.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.0e-07 60.1 43 67.4
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.0e-07 60.1 43 67.4
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-07 60.1 43 62.8
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 67.4
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 67.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 1.3e-07 59.7 43 65.1
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.7e-07 59.3 43 65.1
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.7e-07 59.3 43 67.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.7e-07 59.3 43 67.4
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-07 59.3 43 65.1
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.7e-07 59.3 43 67.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 2.2e-07 58.9 37 75.7
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.2e-07 58.9 43 60.5
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.2e-07 58.9 43 65.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.2e-07 58.9 43 65.1
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 2.2e-07 58.9 84 45.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.2e-07 58.9 43 65.1
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 2.2e-07 58.9 43 65.1
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.2e-07 58.9 43 65.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 65.1
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.9e-07 58.5 37 75.7
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 62.8
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 62.8
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 65.1
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 65.1
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.9e-07 58.5 40 65.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.9e-07 58.5 40 65.0
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.9e-07 58.5 43 65.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.8e-07 58.2 43 67.4
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.8e-07 58.2 43 65.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.8e-07 58.2 43 65.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.8e-07 58.2 43 65.1
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 65.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 62.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 67.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 62.8
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 67.4
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 60.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 62.8
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.0e-07 57.8 43 62.8
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 62.8
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 67.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 62.8
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 62.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 65.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.5e-07 57.4 81 44.4
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 65.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 6.5e-07 57.4 43 62.8
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 8.5e-07 57.0 81 44.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 8.5e-07 57.0 43 60.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 8.5e-07 57.0 42 66.7
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.1e-06 56.6 43 62.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.4e-06 56.2 43 67.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.4e-06 56.2 43 60.5
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.4e-06 56.2 43 65.1
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-06 56.2 43 65.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.4e-06 56.2 43 65.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-06 55.8 43 62.8
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-06 55.8 43 62.8
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.9e-06 55.8 43 62.8
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.9e-06 55.8 43 62.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.5e-06 55.5 43 60.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.5e-06 55.5 43 65.1
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.5e-06 55.5 43 62.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.2e-06 55.1 43 60.5
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.2e-06 55.1 40 62.5
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 4.2e-06 54.7 42 57.1
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.2e-06 54.7 43 60.5
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.2e-06 54.7 43 60.5
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.5e-06 54.3 43 62.8
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.5e-06 54.3 43 60.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 5.5e-06 54.3 42 61.9
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 7.2e-06 53.9 43 60.5
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 7.2e-06 53.9 43 60.5
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 7.2e-06 53.9 43 58.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 7.2e-06 53.9 43 58.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 7.2e-06 53.9 43 60.5
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.4e-06 53.5 82 42.7


User provided reference genes

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