Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35058 Brassica carinata HOM05D011028 ORTHO05D014935 1.0e-115 420.6 314 100.0
C08p40810 Brassica napus HOM05D011028 ORTHO05D014935 1.3e-81 307.4 321 81.3
A09p57610 Brassica napus HOM05D011028 ORTHO05D014935 1.3e-73 280.8 316 69.9
BraA09t41153Z Brassica rapa HOM05D011028 ORTHO05D014935 2.9e-73 279.6 316 69.6
BcaC07g41077 Brassica carinata HOM05D011028 ORTHO05D014935 1.1e-69 267.7 321 76.3
BcaB08g35062 Brassica carinata HOM05D011028 ORTHO05D014935 1.4e-40 171.0 222 47.7
AT5G66630 Arabidopsis thaliana HOM05D000909 ORTHO05D000928 2.4e-27 127.1 117 54.7
C08p40820 Brassica napus HOM05D011028 ORTHO05D023997 3.8e-25 119.8 204 37.7
BolC8t51645H Brassica oleracea HOM05D011028 ORTHO05D014935 3.8e-25 119.8 193 81.9
A09p57620 Brassica napus HOM05D011028 ORTHO05D023997 6.5e-25 119.0 204 37.3
BraA09t41154Z Brassica rapa HOM05D011028 ORTHO05D023997 6.5e-25 119.0 204 37.3
BcaC07g41078 Brassica carinata HOM05D011028 ORTHO05D023997 1.9e-24 117.5 204 37.3
BolC8t51647H Brassica oleracea HOM05D011028 ORTHO05D023997 1.9e-24 117.5 204 37.3
BcaB02g10007 Brassica carinata HOM05D000909 ORTHO05D014935 3.1e-19 100.1 118 44.1
AL8G44500 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 4.1e-19 99.8 112 50.9
Carub.0008s2759 Capsella rubella HOM05D000529 ORTHO05D000472 5.3e-19 99.4 113 48.7
AT5G66900 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 3.8e-17 93.2 112 48.2
A09p09670 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-16 91.7 111 45.9
BraA09t36615Z Brassica rapa HOM05D000529 ORTHO05D000472 1.1e-16 91.7 111 45.9
BcaB04g20245 Brassica carinata HOM05D000529 ORTHO05D000472 1.4e-16 91.3 138 40.6
C09p11460 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-16 91.3 111 46.8
BcaC04g23168 Brassica carinata HOM05D000529 ORTHO05D000472 1.9e-16 90.9 111 46.8
C02p64690 Brassica napus HOM05D000529 ORTHO05D000472 2.5e-16 90.5 111 45.9
BolC2t12531H Brassica oleracea HOM05D000529 ORTHO05D000472 2.5e-16 90.5 111 45.9
CARHR289030 Cardamine hirsuta HOM05D000529 ORTHO05D000472 4.2e-16 89.7 111 42.3
Sp2g29750 Schrenkiella parvula HOM05D000529 ORTHO05D000472 9.4e-16 88.6 151 39.1
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.2e-15 88.2 110 41.8
BcaB04g20089 Brassica carinata HOM05D000529 ORTHO05D000472 1.6e-15 87.8 111 45.0
C07p37490 Brassica napus HOM05D011028 ORTHO05D014935 4.7e-15 86.3 120 42.5
BcaC02g08710 Brassica carinata HOM05D011028 ORTHO05D027594 1.1e-13 81.6 107 40.2
Thhalv10003662m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.1e-13 81.6 111 44.1
C09p11430 Brassica napus HOM05D000529 ORTHO05D000472 1.5e-13 81.3 112 41.1
BcaC04g23170 Brassica carinata HOM05D000529 ORTHO05D000472 5.7e-13 79.3 112 40.2
BolC9t54031H Brassica oleracea HOM05D000529 ORTHO05D000472 5.7e-13 79.3 112 40.2
Sp2g29760 Schrenkiella parvula HOM05D000529 ORTHO05D000472 9.7e-13 78.6 160 33.8
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.3e-12 78.2 123 38.2
AT5G66910 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 1.7e-12 77.8 113 37.2
C07p36750 Brassica napus HOM05D000529 ORTHO05D000472 2.8e-12 77.0 109 39.4
C07p36780 Brassica napus HOM05D000529 ORTHO05D000472 2.8e-12 77.0 117 38.5
BolC7t44191H Brassica oleracea HOM05D000529 ORTHO05D000472 2.8e-12 77.0 109 39.4
BcaC06g33738 Brassica carinata HOM05D011028 ORTHO05D014935 4.8e-12 76.3 86 48.8
BolC7t43050H Brassica oleracea HOM05D000909 ORTHO05D000928 4.8e-12 76.3 123 38.2
BcaC06g33796 Brassica carinata HOM05D000529 ORTHO05D014935 6.3e-12 75.9 109 41.3
BcaC06g33798 Brassica carinata HOM05D011028 ORTHO05D014935 6.3e-12 75.9 109 41.3
BraA06t27024Z Brassica rapa HOM05D000529 ORTHO05D000472 6.3e-12 75.9 109 39.4
Aa31LG1G15460 Aethionema arabicum HOM05D000529 ORTHO05D000472 8.2e-12 75.5 113 36.3
A06p41020 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-11 75.1 109 40.4
BraA06t27026Z Brassica rapa HOM05D000529 ORTHO05D000472 1.1e-11 75.1 109 40.4
C07p36720 Brassica napus HOM05D000529 ORTHO05D000472 1.8e-11 74.3 109 40.4
BolC7t44188H Brassica oleracea HOM05D000529 ORTHO05D000472 1.8e-11 74.3 109 40.4
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 3.1e-11 73.6 114 34.2
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 4.1e-11 73.2 114 36.8
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 9.1e-11 72.0 151 28.5
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 71.6 112 36.6
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 71.6 114 36.0
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 71.6 114 36.0
BcaC06g33794 Brassica carinata HOM05D000529 ORTHO05D000472 1.6e-10 71.2 109 40.4
A06p36590 Brassica napus HOM05D000529 ORTHO05D000472 1.6e-10 71.2 112 39.3
BraA06t26585Z Brassica rapa HOM05D000529 ORTHO05D000472 1.6e-10 71.2 112 39.3
QL06p043036 Quercus lobata HOM05D000529 ORTHO05D000472 1.6e-10 71.2 114 35.1
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 4.5e-10 69.7 117 33.3
QL06p042956 Quercus lobata HOM05D000529 ORTHO05D000472 4.5e-10 69.7 114 35.1
QL06p043096 Quercus lobata HOM05D000529 ORTHO05D000472 4.5e-10 69.7 160 31.2
QL06p043133 Quercus lobata HOM05D000529 ORTHO05D000472 4.5e-10 69.7 160 31.2
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 4.5e-10 69.7 114 34.2
A07p16990 Brassica napus HOM05D000529 ORTHO05D000472 5.9e-10 69.3 154 33.1
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 5.9e-10 69.3 149 28.2
CSS0017568 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 1.0e-09 68.6 113 31.9
Thhalv10020099m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.0e-09 68.6 112 34.8
BcaB08g34626 Brassica carinata HOM05D000529 ORTHO05D000472 1.7e-09 67.8 142 32.4
QL01p034976 Quercus lobata HOM05D000529 ORTHO05D000472 1.7e-09 67.8 97 38.1
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 2.2e-09 67.4 114 34.2
Lsat_1_v5_gn_9_125141 Lactuca sativa HOM05D000529 ORTHO05D000472 2.9e-09 67.0 187 27.3
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 2.9e-09 67.0 126 31.7
BcaB02g09973 Brassica carinata HOM05D000529 ORTHO05D000472 3.8e-09 66.6 112 39.3
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 3.8e-09 66.6 107 34.6
CARHR177830 Cardamine hirsuta HOM05D011028 ORTHO05D014935 5.0e-09 66.2 127 34.6
DCAR_021433 Daucus carota HOM05D000529 ORTHO05D000472 8.5e-09 65.5 113 33.6
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 8.5e-09 65.5 110 30.0
vmacro17917 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 8.5e-09 65.5 113 31.0
BolC2t12530H Brassica oleracea HOM05D000529 ORTHO05D000472 1.1e-08 65.1 133 33.8
BolC7t44194H Brassica oleracea HOM05D000529 ORTHO05D000472 1.1e-08 65.1 111 35.1
BcaB02g09974 Brassica carinata HOM05D000529 ORTHO05D000472 1.9e-08 64.3 113 36.3
Lsat_1_v5_gn_9_29080 Lactuca sativa HOM05D000529 ORTHO05D000472 1.9e-08 64.3 108 35.2
Nitab4.5_0007024g0050 Nicotiana tabacum HOM05D000529 ORTHO05D000472 1.9e-08 64.3 101 27.7
Duzib264G0157 Durio zibethinus HOM05D000529 ORTHO05D000472 2.5e-08 63.9 144 26.4
Thhalv10005443m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 2.5e-08 63.9 109 36.7
Nitab4.5_0009901g0030 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.2e-08 63.5 119 28.6
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 3.2e-08 63.5 115 28.7
A04p16860 Brassica napus HOM05D050260 ORTHO05D027594 4.2e-08 63.2 170 34.7
C07p36810 Brassica napus HOM05D000529 ORTHO05D000472 4.2e-08 63.2 111 33.3
Lsat_1_v5_gn_9_125101 Lactuca sativa HOM05D000529 ORTHO05D000472 4.2e-08 63.2 114 29.8
Solyc02g090380.4 Solanum lycopersicum HOM05D000529 ORTHO05D000472 4.2e-08 63.2 101 28.7
Sopen02g035080 Solanum pennellii HOM05D000529 ORTHO05D000472 4.2e-08 63.2 101 28.7
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 4.2e-08 63.2 113 29.2
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 5.5e-08 62.8 183 27.3
CAN.G836.51 Capsicum annuum HOM05D000529 ORTHO05D000472 5.5e-08 62.8 105 28.6
Nitab4.5_0000806g0130 Nicotiana tabacum HOM05D000529 ORTHO05D000472 5.5e-08 62.8 113 29.2
GSVIVG01003571001 Vitis vinifera HOM05D000529 ORTHO05D000472 5.5e-08 62.8 112 28.6
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 7.2e-08 62.4 184 27.7
ECA238G2361 Erigeron canadensis HOM05D000529 ORTHO05D000472 7.2e-08 62.4 117 31.6
Gorai.007G210000 Gossypium raimondii HOM05D000529 ORTHO05D000472 7.2e-08 62.4 110 30.0
QL01p034905 Quercus lobata HOM05D000529 ORTHO05D000472 9.4e-08 62.0 100 37.0
BraA04t17319Z Brassica rapa HOM05D050260 ORTHO05D027594 1.2e-07 61.6 170 33.5
HanXRQChr02g0048181 Helianthus annuus HOM05D000529 ORTHO05D000472 1.2e-07 61.6 117 29.1
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-07 61.6 100 37.0
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-07 61.6 100 37.0
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 1.6e-07 61.2 102 32.4
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.6e-07 61.2 117 29.9
Lsat_1_v5_gn_9_123601 Lactuca sativa HOM05D000529 ORTHO05D000472 2.1e-07 60.8 115 31.3
A02p38850 Brassica napus HOM05D000529 ORTHO05D000472 2.7e-07 60.5 108 32.4
Gohir.A11G189400 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.7e-07 60.5 110 29.1
Gohir.D11G196100 Gossypium hirsutum HOM05D000529 ORTHO05D000472 2.7e-07 60.5 110 29.1
A07p17000 Brassica napus HOM05D000529 ORTHO05D000472 3.6e-07 60.1 109 34.9
BraA07t29427Z Brassica rapa HOM05D000529 ORTHO05D000472 3.6e-07 60.1 109 34.9
HanXRQChr07g0191761 Helianthus annuus HOM05D000529 ORTHO05D000472 3.6e-07 60.1 108 29.6
BraA02t08859Z Brassica rapa HOM05D000529 ORTHO05D000472 4.7e-07 59.7 108 32.4
COL.COLO4_11350 Corchorus olitorius HOM05D000529 ORTHO05D000472 4.7e-07 59.7 148 27.7
QL01p035125 Quercus lobata HOM05D000529 ORTHO05D000472 4.7e-07 59.7 119 33.6
QL03p070309 Quercus lobata HOM05D000529 ORTHO05D000472 4.7e-07 59.7 119 33.6
BcaC06g34725 Brassica carinata HOM05D000909 ORTHO05D000928 6.1e-07 59.3 86 38.4
BolC2t11905H Brassica oleracea HOM05D000529 ORTHO05D027594 6.1e-07 59.3 108 31.5
CAN.G836.52 Capsicum annuum HOM05D000529 ORTHO05D000472 6.1e-07 59.3 101 26.7
HanXRQChr07g0191781 Helianthus annuus HOM05D000529 ORTHO05D000472 6.1e-07 59.3 104 32.7
Rhsim08G0202200 Rhododendron simsii HOM05D001266 ORTHO05D010311 6.1e-07 59.3 101 31.7
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 8.0e-07 58.9 120 29.2
QL03p072647 Quercus lobata HOM05D000529 ORTHO05D000472 8.0e-07 58.9 100 34.0
Sabra07G0035300 Salix brachista HOM05D000529 ORTHO05D000472 8.0e-07 58.9 114 27.2
Thecc.01G050400 Theobroma cacao HOM05D000529 ORTHO05D000472 8.0e-07 58.9 110 28.2
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.0e-06 58.5 120 29.2
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 1.0e-06 58.5 114 30.7
Lsat_1_v5_gn_9_123581 Lactuca sativa HOM05D000529 ORTHO05D000472 1.0e-06 58.5 136 27.2
Sabra07G0031700 Salix brachista HOM05D000529 ORTHO05D000472 1.0e-06 58.5 110 32.7
vmacro17918 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 1.0e-06 58.5 113 31.0
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 1.4e-06 58.2 180 23.3
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 1.4e-06 58.2 110 30.0
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.4e-06 58.2 107 29.9
QL03p072768 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-06 58.2 100 34.0
Nitab4.5_0002157g0040 Nicotiana tabacum HOM05D000529 ORTHO05D000472 1.8e-06 57.8 101 26.7
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.8e-06 57.8 113 27.4
BcaC03g17818 Brassica carinata HOM05D000529 ORTHO05D000472 2.3e-06 57.4 108 30.6
C02p58420 Brassica napus HOM05D000529 ORTHO05D000472 2.3e-06 57.4 108 30.6
Dinv19756 Davidia involucrata HOM05D003049 ORTHO05D003531 2.3e-06 57.4 128 27.3
QL06p043250 Quercus lobata HOM05D000529 ORTHO05D000472 2.3e-06 57.4 105 30.5
BcaB04g20091 Brassica carinata HOM05D000529 ORTHO05D000472 3.0e-06 57.0 115 31.3
CSS0009849 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 3.0e-06 57.0 113 29.2
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 3.0e-06 57.0 114 27.2
PGR102G1677 Punica granatum HOM05D000529 ORTHO05D000472 3.0e-06 57.0 111 34.2
CSS0019496 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 4.0e-06 56.6 113 29.2
MELO3C004354.2 Cucumis melo HOM05D000529 ORTHO05D000472 4.0e-06 56.6 114 30.7
Rhsim08G0104500 Rhododendron simsii HOM05D000529 ORTHO05D000472 4.0e-06 56.6 126 29.4
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 4.0e-06 56.6 119 30.3
Sabra07G0035000 Salix brachista HOM05D000529 ORTHO05D000472 4.0e-06 56.6 110 32.7
QL06p043215 Quercus lobata HOM05D000529 ORTHO05D000472 5.2e-06 56.2 166 26.5
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 5.2e-06 56.2 110 25.5
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 6.7e-06 55.8 114 27.2
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 6.7e-06 55.8 114 28.1
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 6.7e-06 55.8 114 27.2
Rhsim08G0104400 Rhododendron simsii HOM05D000529 ORTHO05D000472 6.7e-06 55.8 121 29.8
ECA248G0195 Erigeron canadensis HOM05D000529 ORTHO05D000472 8.8e-06 55.5 128 28.1
Sabra07G0035100 Salix brachista HOM05D000529 ORTHO05D000472 8.8e-06 55.5 114 26.3


User provided reference genes

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