Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 1.2e-107 393.3 203 100.0
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 2.8e-98 362.1 203 94.1
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 2.8e-98 362.1 203 94.1
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 2.8e-98 362.1 203 94.1
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 6.3e-98 360.9 203 93.6
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 1.8e-97 359.4 203 93.6
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 9.5e-94 347.1 207 88.9
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 2.6e-91 339.0 206 85.4
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 1.7e-90 336.3 207 86.0
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 3.2e-89 332.0 207 84.5
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 3.3e-86 322.0 206 83.0
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 1.4e-73 280.0 209 75.6
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 6.0e-72 274.6 209 70.3
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 4.2e-57 225.3 164 68.9
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 7.8e-56 221.1 165 67.9
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 1.0e-55 220.7 170 68.8
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 3.0e-55 219.2 163 69.3
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 8.7e-55 217.6 211 56.4
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 1.1e-54 217.2 172 66.9
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.9e-54 216.5 198 59.6
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 5.6e-54 214.9 178 64.6
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 7.3e-54 214.5 208 60.1
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 9.6e-54 214.2 178 64.6
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 9.6e-54 214.2 178 64.6
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 1.3e-53 213.8 208 60.1
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 1.3e-53 213.8 210 58.1
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 1.6e-53 213.4 208 58.2
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 4.8e-53 211.8 195 60.0
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 6.2e-53 211.5 208 54.8
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.1e-52 210.7 198 58.6
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 1.8e-52 209.9 208 55.3
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 3.1e-52 209.1 187 57.2
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 4.0e-52 208.8 170 61.8
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 4.0e-52 208.8 195 60.5
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 4.0e-52 208.8 180 59.4
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 1.2e-51 207.2 203 55.2
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 1.2e-51 207.2 173 63.6
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 1.5e-51 206.8 204 55.9
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 4.4e-51 205.3 163 65.0
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 5.8e-51 204.9 206 55.3
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 9.9e-51 204.1 188 58.5
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 1.3e-50 203.8 212 55.7
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 1.3e-50 203.8 163 63.2
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 1.7e-50 203.4 194 59.8
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 1.7e-50 203.4 184 57.6
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 2.9e-50 202.6 203 55.2
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 4.9e-50 201.8 212 55.7
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 8.4e-50 201.1 165 61.8
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 1.4e-49 200.3 210 53.3
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 1.9e-49 199.9 164 65.2
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 1.9e-49 199.9 167 60.5
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 1.9e-49 199.9 204 54.9
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 3.2e-49 199.1 168 61.9
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 5.4e-49 198.4 194 56.7
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 5.4e-49 198.4 185 58.4
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 7.1e-49 198.0 203 53.2
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 1.6e-48 196.8 174 59.2
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 1.6e-48 196.8 179 57.5
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 1.6e-48 196.8 202 54.5
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 2.1e-48 196.4 180 56.7
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 2.7e-48 196.1 210 55.2
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 2.7e-48 196.1 198 57.1
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 3.5e-48 195.7 177 56.5
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 6.0e-48 194.9 182 57.7
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 7.9e-48 194.5 160 65.6
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 1.0e-47 194.1 162 63.6
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 1.3e-47 193.7 201 56.7
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 2.3e-47 193.0 182 55.5
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 2.3e-47 193.0 217 50.2
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 3.0e-47 192.6 205 53.2
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 3.9e-47 192.2 186 53.8
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 5.1e-47 191.8 166 60.2
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 6.6e-47 191.4 174 58.6
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 1.9e-46 189.9 196 53.6
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 1.9e-46 189.9 202 53.5
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 2.5e-46 189.5 191 53.4
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 9.6e-46 187.6 203 52.7
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 9.6e-46 187.6 201 55.2
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 1.6e-45 186.8 196 52.6
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 2.8e-45 186.0 194 52.6
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 2.8e-45 186.0 165 57.6
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 3.6e-45 185.7 162 60.5
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 4.8e-45 185.3 203 49.8
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 6.2e-45 184.9 159 59.1
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 1.8e-44 183.3 203 51.7
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 4.0e-44 182.2 185 56.2
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 9.0e-44 181.0 180 53.3
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 1.5e-43 180.3 166 57.2
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.0e-43 179.9 151 64.2
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 2.6e-43 179.5 200 52.5
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 4.9e-42 175.3 156 57.7
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 4.9e-42 175.3 176 51.1
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 1.9e-41 173.3 162 54.9
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 9.3e-41 171.0 201 51.7
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.7e-40 169.5 92 90.2
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 4.6e-40 168.7 186 52.7
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 2.3e-39 166.4 163 51.5
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 6.7e-39 164.9 162 50.6
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 1.5e-38 163.7 160 53.8
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 1.9e-38 163.3 162 50.0
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.5e-38 162.9 119 79.8
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 4.8e-37 158.7 171 48.0
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 2.5e-33 146.4 179 44.1
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 3.4e-27 125.9 155 42.6
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 7.4e-22 108.2 126 46.8
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 3.7e-21 105.9 127 48.8
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 2.5e-17 93.2 144 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 3.9e-15 85.9 154 34.4
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 2.0e-14 83.6 144 30.6
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 4.8e-13 79.0 114 47.4
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 1.2e-11 74.3 145 33.8
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 4.5e-11 72.4 158 32.3
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 7.7e-11 71.6 145 35.2
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.3e-10 70.9 153 31.4
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 9.4e-09 64.7 76 48.7
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 1.2e-08 64.3 73 52.1


User provided reference genes

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