Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 4.1e-75 284.6 143 100.0
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 1.4e-14 83.6 42 88.1
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 2.3e-14 82.8 42 88.1
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 3.1e-14 82.4 40 92.5
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 6.8e-14 81.3 42 85.7
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 6.8e-14 81.3 42 85.7
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 6.8e-14 81.3 42 85.7
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 1.2e-13 80.5 40 90.0
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.5e-13 80.1 43 83.7
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.9e-11 73.2 42 71.4
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.9e-11 73.2 42 71.4
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 2.4e-11 72.8 42 71.4
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 4.1e-11 72.0 42 71.4
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 5.4e-11 71.6 43 69.8
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 5.4e-11 71.6 112 38.4
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 5.4e-11 71.6 42 76.2
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 7.1e-11 71.2 42 76.2
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 7.1e-11 71.2 53 60.4
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 7.1e-11 71.2 42 71.4
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 9.2e-11 70.9 42 71.4
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.2e-10 70.5 97 41.2
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.2e-10 70.5 41 70.7
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 1.2e-10 70.5 40 72.5
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.2e-10 70.5 42 69.0
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.6e-10 70.1 42 71.4
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 1.6e-10 70.1 42 71.4
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 2.1e-10 69.7 42 69.0
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 2.1e-10 69.7 42 69.0
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 2.1e-10 69.7 42 66.7
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 2.7e-10 69.3 42 66.7
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 2.7e-10 69.3 42 69.0
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 2.7e-10 69.3 43 67.4
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 2.7e-10 69.3 42 69.0
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 3.5e-10 68.9 40 72.5
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 4.6e-10 68.6 42 69.0
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 6.0e-10 68.2 127 35.4
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 6.0e-10 68.2 42 66.7
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 6.0e-10 68.2 42 66.7
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 7.8e-10 67.8 40 70.0
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 7.8e-10 67.8 42 66.7
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.8e-10 67.8 42 64.3
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.8e-10 67.8 42 64.3
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 7.8e-10 67.8 101 40.6
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 7.8e-10 67.8 39 71.8
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 1.0e-09 67.4 42 66.7
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 1.0e-09 67.4 42 69.0
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 1.0e-09 67.4 39 71.8
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.3e-09 67.0 47 59.6
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 1.7e-09 66.6 42 66.7
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 1.7e-09 66.6 42 66.7
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.7e-09 66.6 39 71.8
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 1.7e-09 66.6 42 69.0
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.7e-09 66.6 42 66.7
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 2.3e-09 66.2 39 71.8
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 2.3e-09 66.2 42 66.7
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 2.3e-09 66.2 42 64.3
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 2.3e-09 66.2 41 70.7
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 2.3e-09 66.2 42 61.9
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 2.3e-09 66.2 36 77.8
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 2.3e-09 66.2 36 77.8
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 3.0e-09 65.9 39 69.2
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.0e-09 65.9 101 39.6
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 3.0e-09 65.9 39 69.2
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 3.9e-09 65.5 43 60.5
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 3.9e-09 65.5 42 64.3
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 3.9e-09 65.5 42 64.3
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 3.9e-09 65.5 44 65.9
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 3.9e-09 65.5 36 77.8
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.1e-09 65.1 101 39.6
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.1e-09 65.1 101 39.6
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 5.1e-09 65.1 42 66.7
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 6.6e-09 64.7 42 61.9
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 6.6e-09 64.7 101 42.6
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.6e-09 64.7 101 42.6
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.6e-09 64.7 101 42.6
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 6.6e-09 64.7 54 55.6
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 8.6e-09 64.3 39 66.7
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 1.1e-08 63.9 97 40.2
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.1e-08 63.9 42 64.3
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.1e-08 63.9 44 59.1
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.5e-08 63.5 47 57.4
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.5e-08 63.5 47 57.4
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.5e-08 63.5 44 63.6
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 2.5e-08 62.8 39 64.1
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 2.5e-08 62.8 42 61.9
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 2.5e-08 62.8 38 65.8
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 2.5e-08 62.8 128 35.2
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 5.6e-08 61.6 42 59.5
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 5.6e-08 61.6 42 59.5
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 7.3e-08 61.2 38 63.2
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 9.5e-08 60.8 39 64.1
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.6e-07 60.1 38 63.2
BcaC02g11397 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-07 59.7 42 69.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.1e-06 57.4 59 50.8
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.1e-06 57.4 36 63.9
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-06 56.2 58 50.0
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.4e-06 56.2 58 50.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.4e-06 56.2 58 50.0
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 5.2e-06 55.1 45 62.2
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 6.8e-06 54.7 37 59.5
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 8.9e-06 54.3 43 51.2


User provided reference genes

Program Settings