Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-125 453.4 241 100.0
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 4.7e-124 448.0 241 98.8
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-123 446.4 241 98.8
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 8.8e-123 443.7 241 97.5
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.2e-122 443.4 241 97.9
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-122 443.4 242 98.3
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-122 443.4 241 97.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.3e-121 439.9 241 96.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.7e-121 439.5 241 96.3
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 2.2e-121 439.1 242 97.9
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 2.2e-121 439.1 242 97.9
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 6.3e-121 437.6 244 97.5
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 4.1e-120 434.9 244 97.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 7.0e-120 434.1 246 95.1
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.2e-117 425.2 241 93.8
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 9.4e-117 423.7 241 92.9
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 4.0e-115 418.3 241 91.7
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 4.1e-112 408.3 241 88.0
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 7.8e-103 377.5 241 82.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 8.6e-102 374.0 241 82.2
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.6e-100 369.8 243 81.9
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.9e-93 346.3 241 74.3
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 7.3e-93 344.4 240 73.8
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.8e-92 342.4 243 74.1
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 4.7e-92 341.7 196 92.3
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 6.2e-92 341.3 241 74.3
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.4e-91 340.1 241 73.4
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.0e-91 338.6 241 72.2
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.5e-90 336.7 241 73.4
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.0e-90 336.3 241 73.0
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 72.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 72.6
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 5.8e-90 334.7 242 71.9
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 9.8e-90 334.0 241 73.0
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 2.2e-89 332.8 241 71.8
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.2e-89 332.8 241 72.6
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 70.7
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 72.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 72.6
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 71.8
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 70.1
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 72.2
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.9e-89 331.6 241 72.6
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.4e-88 330.1 241 71.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.4e-88 330.1 241 71.8
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 72.2
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 69.3
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.9e-88 329.7 242 72.3
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 72.2
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.4e-88 329.3 241 72.2
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 7.1e-88 327.8 235 70.6
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.1e-88 327.8 241 71.4
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 2.1e-87 326.2 241 71.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.7e-87 325.9 241 71.0
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 6.0e-87 324.7 242 71.1
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.3e-86 323.6 245 70.6
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.7e-86 323.2 241 71.0
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 2.3e-86 322.8 242 70.2
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.9e-86 322.0 242 70.2
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.9e-86 322.0 241 68.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 5.1e-86 321.6 242 68.6
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.1e-86 321.6 241 68.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.1e-86 321.6 242 70.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 6.6e-86 321.2 242 70.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 8.6e-86 320.9 242 69.4
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.5e-85 320.1 244 68.9
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.9e-85 319.7 238 71.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-85 319.7 244 70.9
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 3.3e-85 318.9 242 68.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.3e-85 318.9 242 69.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 4.3e-85 318.5 241 70.1
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 5.6e-85 318.2 239 71.1
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 5.6e-85 318.2 239 71.5
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 7.3e-85 317.8 244 68.9
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 2.1e-84 316.2 242 68.6
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 2.1e-84 316.2 244 68.4
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.1e-84 316.2 241 67.6
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 4.7e-84 315.1 282 62.8
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 1.8e-83 313.2 237 69.6
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 5.2e-83 311.6 245 68.2
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.2e-82 310.5 241 66.8
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 1.2e-82 310.5 242 68.6
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 3.4e-82 308.9 243 68.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 4.4e-82 308.5 242 68.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 4.4e-82 308.5 242 65.3
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.6e-82 307.8 244 68.0
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 9.9e-82 307.4 242 66.9
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 9.9e-82 307.4 241 66.0
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 9.9e-82 307.4 241 66.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.2e-81 306.2 243 67.9
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.2e-81 306.2 242 65.3
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 2.9e-81 305.8 270 61.5
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.7e-81 305.4 243 66.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-80 303.5 241 68.9
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.4e-80 303.5 243 67.1
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.9e-80 303.1 243 66.7
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 4.1e-80 302.0 220 70.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.4e-80 301.6 243 66.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 7.1e-80 301.2 243 66.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.7e-79 299.3 258 65.1
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.9e-78 295.4 226 68.1
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 5.1e-78 295.0 222 69.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 6.6e-78 294.7 281 60.5
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 6.6e-78 294.7 246 65.4
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.5e-77 293.5 258 64.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.8e-76 289.3 223 67.3
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.8e-76 289.3 246 62.6
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.8e-76 289.3 222 69.4
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.2e-76 288.1 221 67.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.1e-75 287.3 197 75.6
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.4e-75 287.0 290 55.5
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 3.1e-75 285.8 202 70.8
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-74 282.7 196 75.0
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.4e-74 282.3 244 61.9
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 7.6e-74 281.2 196 73.5
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 7.6e-74 281.2 196 73.5
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 9.9e-74 280.8 244 61.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.9e-73 279.3 231 63.2
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.2e-72 275.8 196 71.4
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.2e-72 275.8 199 71.9
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.4e-72 275.0 199 72.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 7.1e-72 274.6 204 70.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 7.1e-72 274.6 199 71.9
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.3e-72 274.2 196 69.9
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 4.6e-71 271.9 197 71.6
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 4.6e-71 271.9 196 71.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.0e-70 269.2 276 55.8
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 7.1e-64 248.1 242 57.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 4.6e-63 245.4 175 72.0
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.0e-63 245.0 220 60.0
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.6e-62 241.5 179 68.2
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 8.1e-60 234.6 188 63.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.0e-54 216.1 155 73.5
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.7e-54 214.9 196 61.7
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 6.9e-51 204.9 210 54.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.0e-46 189.5 135 69.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-45 187.6 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-39 167.5 112 78.6
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.8e-35 153.7 130 58.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.0e-35 151.4 149 56.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-32 144.4 161 50.3
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.5e-32 143.3 223 45.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.8e-28 129.8 198 38.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.6e-26 123.2 225 40.0
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 4.5e-26 122.5 217 36.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 3.2e-24 116.3 237 32.9
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 3.6e-23 112.8 193 36.8
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 6.1e-23 112.1 193 36.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 7.9e-23 111.7 99 58.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-19 101.3 236 33.9
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 3.8e-17 92.8 84 63.1
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 5.0e-17 92.4 97 50.5
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.4e-13 79.3 177 37.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 6.3e-12 75.5 59 59.3
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 7.0e-11 72.0 64 62.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-10 71.2 50 82.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-10 70.9 40 97.5
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 3.8e-09 66.2 138 40.6
MCO03G035 Micromonas commoda HOM05D002293 ORTHO05D005475 1.6e-07 60.8 174 28.7


User provided reference genes

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