Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-246 854.4 455 100.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 8.1e-210 733.8 467 85.2
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 3.2e-206 721.8 463 84.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.3e-204 715.7 462 84.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-203 713.4 458 83.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-203 712.2 444 82.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 5.6e-203 711.1 458 81.2
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-202 708.8 461 82.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 4.7e-202 708.0 464 82.5
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 4.4e-200 701.4 458 80.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.4e-200 701.4 463 81.9
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 8.4e-199 697.2 458 80.3
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 3.9e-196 688.3 462 78.8
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.4e-192 674.9 461 80.5
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 7.1e-190 667.5 469 78.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.0e-180 635.6 471 70.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.1e-180 634.8 471 69.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.7e-172 607.8 474 67.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.9e-167 592.4 468 67.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.1e-165 586.3 478 65.9
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.5e-158 562.8 455 69.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-157 559.3 390 80.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.6e-157 558.9 476 63.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.9e-148 528.9 484 58.9
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.6e-147 526.2 471 58.8
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.4e-147 525.4 485 58.6
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 4.4e-147 525.4 485 58.6
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 9.7e-147 524.2 484 57.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.3e-146 523.9 480 58.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 7.7e-144 514.6 485 56.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 9.4e-142 507.7 471 56.7
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 4.7e-141 505.4 465 59.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.0e-140 502.7 473 55.6
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 6.7e-140 501.5 479 56.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.0e-139 500.0 472 55.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.3e-139 499.2 485 55.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 9.7e-139 497.7 476 54.8
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.1e-137 492.7 466 56.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.2e-135 486.5 492 55.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 5.0e-135 485.3 466 55.8
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.9e-134 483.4 471 55.4
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 9.4e-134 481.1 472 57.6
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-133 480.7 477 54.1
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.6e-133 480.3 473 56.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.1e-133 479.9 482 55.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.1e-133 478.4 479 54.7
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.4e-132 477.2 477 53.5
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-132 476.9 472 54.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.0e-132 476.1 486 54.1
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 6.7e-132 474.9 446 56.7
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.2e-131 474.2 486 56.8
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-131 473.8 471 53.5
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.6e-131 473.0 468 54.7
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 5.7e-131 471.9 472 52.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-130 470.7 485 53.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 3.7e-130 469.2 441 56.2
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.7e-130 469.2 473 54.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.8e-130 468.8 453 54.5
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.2e-130 468.0 477 53.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.4e-129 467.2 478 53.6
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.4e-129 467.2 474 52.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 9.1e-129 464.5 487 52.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.6e-128 463.8 473 51.6
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.5e-128 462.6 494 51.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.9e-128 461.8 464 52.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 5.9e-128 461.8 471 52.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.7e-127 460.3 481 54.9
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.8e-127 459.1 498 54.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.0e-127 458.8 471 51.6
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 6.5e-127 458.4 471 51.6
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.5e-126 456.4 489 52.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.2e-126 455.7 489 52.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 4.2e-126 455.7 475 51.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.4e-126 454.5 454 53.3
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.6e-125 453.8 490 51.2
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.1e-125 453.4 479 52.2
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-124 449.5 486 53.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 5.2e-124 448.7 471 51.2
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 8.8e-124 448.0 448 54.5
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-123 447.2 502 48.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-122 444.1 441 56.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.2e-122 443.4 473 54.3
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 2.4e-121 439.9 441 53.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.1e-121 439.5 485 50.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.0e-121 438.3 435 56.1
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 9.1e-121 438.0 444 54.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.2e-120 437.6 485 50.5
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.7e-119 433.7 470 51.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.1e-118 431.0 476 50.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.9e-118 430.3 480 54.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.9e-118 430.3 477 49.1
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 9.5e-118 427.9 471 51.6
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.1e-117 425.2 484 49.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.8e-116 423.7 426 55.4
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.6e-115 419.9 493 48.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.7e-114 416.0 410 55.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.3e-114 415.2 473 48.8
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 6.3e-114 415.2 483 48.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.3e-114 415.2 472 48.3
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 8.3e-114 414.8 478 51.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-113 414.5 451 54.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.4e-113 414.1 474 52.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.8e-113 413.7 471 48.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.3e-111 407.5 473 47.6
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.6e-111 404.8 422 52.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 8.6e-111 404.8 472 48.7
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.6e-110 402.1 485 47.8
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.7e-109 399.1 480 48.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.4e-108 397.5 392 54.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.8e-108 397.1 471 47.1
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 5.2e-108 395.6 470 50.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.8e-108 395.2 508 47.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 9.8e-107 391.3 578 42.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-106 391.0 536 44.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.3e-106 391.0 474 47.5
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.2e-106 390.2 503 45.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.0e-103 381.3 453 47.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.1e-101 373.6 400 50.0
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.4e-99 365.9 433 48.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.7e-98 364.0 479 44.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-97 360.9 519 41.8
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-97 360.5 519 41.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.8e-96 355.1 470 47.4
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.1e-94 351.3 438 47.7
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.3e-94 349.7 370 49.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 4.3e-94 349.4 446 46.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 9.5e-94 348.2 436 46.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.6e-91 340.1 471 42.3
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.7e-87 327.4 392 51.3
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.3e-87 327.0 445 43.1
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.2e-85 321.2 473 44.0
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.6e-83 313.5 432 44.7
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 7.8e-80 302.0 485 40.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 5.3e-76 289.3 412 41.7
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.4e-74 282.3 463 41.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 8.4e-74 282.0 203 68.5
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 6.0e-72 275.8 340 45.6
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.3e-71 274.6 410 45.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 8.7e-71 271.9 203 66.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 6.2e-69 265.8 438 36.8
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-68 264.2 482 36.7
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 3.1e-68 263.5 278 49.6
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-64 251.1 290 46.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.5e-64 250.0 264 49.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 4.6e-64 249.6 209 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 9.6e-62 241.9 251 47.8
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 2.6e-51 207.2 163 62.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.8e-39 167.9 345 33.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.3e-36 156.4 121 62.0
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 6.9e-36 156.0 257 39.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 5.9e-35 152.9 227 41.4
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 8.5e-34 149.1 315 35.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.4e-33 148.3 143 55.2
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 3.0e-31 140.6 229 33.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.2e-29 132.5 178 37.6
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-25 121.7 93 61.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.7e-24 116.7 165 41.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.5e-19 100.1 65 67.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.7e-19 99.4 114 47.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.5e-18 95.9 122 45.9
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.6e-14 84.3 63 60.3
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.1e-12 79.0 209 28.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-12 78.2 88 44.3
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 5.9e-11 73.2 130 39.2
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 1.3e-10 72.0 130 38.5
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.6e-06 57.8 54 50.0


User provided reference genes

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