Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 2.5e-30 134.8 68 100.0
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 8.5e-23 109.8 71 80.3
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 4.2e-22 107.5 60 86.7
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 5.5e-22 107.1 60 86.7
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 5.5e-22 107.1 60 86.7
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 1.4e-20 102.4 68 75.0
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 1.4e-20 102.4 68 75.0
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 1.8e-20 102.1 68 75.0
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 4.4e-19 97.4 57 82.5
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 4.4e-19 97.4 57 82.5
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 1.3e-18 95.9 59 79.7
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 3.7e-18 94.4 58 79.3
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 6.3e-18 93.6 72 73.6
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 8.3e-18 93.2 58 77.6
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 3.1e-17 91.3 68 70.6
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 5.3e-17 90.5 68 69.1
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 9.1e-17 89.7 68 72.1
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 9.1e-17 89.7 67 70.1
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 1.0e-15 86.3 68 67.6
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 6.5e-15 83.6 68 63.2
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 2.1e-13 78.6 65 69.2
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 1.4e-12 75.9 52 73.1
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 1.8e-12 75.5 50 74.0
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 4.0e-12 74.3 49 75.5
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 5.2e-12 73.9 63 65.1
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 5.2e-12 73.9 50 72.0
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 1.2e-11 72.8 40 85.0
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 1.2e-11 72.8 46 78.3
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 1.5e-11 72.4 61 62.3
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 2.0e-11 72.0 47 72.3
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 2.6e-11 71.6 40 85.0
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 2.6e-11 71.6 62 59.7
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 3.4e-11 71.2 52 67.3
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 3.4e-11 71.2 44 77.3
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 3.4e-11 71.2 45 73.3
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 3.4e-11 71.2 50 70.0
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 3.4e-11 71.2 50 70.0
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 4.4e-11 70.9 68 55.9
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 4.4e-11 70.9 41 80.5
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 7.5e-11 70.1 48 68.8
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 1.3e-10 69.3 44 72.7
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 1.7e-10 68.9 61 60.7
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.7e-10 68.9 48 72.9
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 1.7e-10 68.9 48 72.9
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 1.7e-10 68.9 48 72.9
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.7e-10 68.9 49 71.4
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 1.7e-10 68.9 44 75.0
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 2.2e-10 68.6 45 71.1
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 2.2e-10 68.6 47 72.3
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 2.2e-10 68.6 39 79.5
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 2.8e-10 68.2 42 76.2
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 3.7e-10 67.8 45 71.1
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 3.7e-10 67.8 44 75.0
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 3.7e-10 67.8 48 66.7
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 4.8e-10 67.4 58 62.1
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 4.8e-10 67.4 42 76.2
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 6.3e-10 67.0 61 57.4
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 6.3e-10 67.0 60 61.7
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 8.3e-10 66.6 46 69.6
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 8.3e-10 66.6 41 78.0
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 8.3e-10 66.6 44 72.7
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 1.1e-09 66.2 41 73.2
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 1.4e-09 65.9 57 64.9
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 1.8e-09 65.5 62 58.1
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 1.8e-09 65.5 65 56.9
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 2.4e-09 65.1 53 66.0
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 3.1e-09 64.7 66 54.5
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 3.1e-09 64.7 47 66.0
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 5.4e-09 63.9 53 52.8
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 5.4e-09 63.9 47 70.2
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 5.4e-09 63.9 40 70.0
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 7.0e-09 63.5 42 71.4
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 7.0e-09 63.5 42 71.4
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 7.0e-09 63.5 43 74.4
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 1.2e-08 62.8 38 73.7
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 1.6e-08 62.4 53 58.5
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 1.6e-08 62.4 59 55.9
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.6e-08 62.4 44 68.2
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.6e-08 62.4 37 78.4
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 1.6e-08 62.4 63 57.1
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 2.0e-08 62.0 46 65.2
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.7e-08 61.6 56 58.9
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.7e-08 61.6 56 58.9
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 2.7e-08 61.6 54 59.3
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.5e-08 61.2 44 68.2
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.5e-08 61.2 44 68.2
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.5e-08 61.2 44 68.2
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 4.5e-08 60.8 56 62.5
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 1.0e-07 59.7 59 54.2
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 1.0e-07 59.7 39 74.4
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 1.0e-07 59.7 37 78.4
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 1.3e-07 59.3 58 55.2
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 1.3e-07 59.3 53 56.6
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 1.5e-06 55.8 45 60.0
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 4.2e-06 54.3 37 64.9


User provided reference genes

Program Settings