Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34905 Brassica carinata HOM05D007918 ORTHO05D010025 4.0e-75 284.6 141 100.0
A09p58930 Brassica napus HOM05D007918 ORTHO05D010025 1.3e-60 236.5 128 89.1
BraA09t41278Z Brassica rapa HOM05D007918 ORTHO05D010025 1.3e-60 236.5 128 89.1
Sp3g33610 Schrenkiella parvula HOM05D007918 ORTHO05D010025 2.1e-60 235.7 128 88.3
BcaC07g41218 Brassica carinata HOM05D007918 ORTHO05D010025 5.3e-59 231.1 128 87.5
C08p42250 Brassica napus HOM05D007918 ORTHO05D010025 5.3e-59 231.1 128 87.5
BolC8t51784H Brassica oleracea HOM05D007918 ORTHO05D010025 5.3e-59 231.1 128 87.5
CARHR110890 Cardamine hirsuta HOM05D007918 ORTHO05D010025 3.4e-58 228.4 126 85.7
BcaB07g31591 Brassica carinata HOM05D007918 ORTHO05D010025 5.8e-58 227.6 128 85.2
Thhalv10002121m.g Eutrema salsugineum HOM05D007918 ORTHO05D010025 1.7e-57 226.1 129 85.3
BcaC04g22795 Brassica carinata HOM05D007918 ORTHO05D010025 2.1e-55 219.2 124 84.7
BolC9t54431H Brassica oleracea HOM05D007918 ORTHO05D010025 2.1e-55 219.2 124 84.7
A09p12860 Brassica napus HOM05D007918 ORTHO05D010025 3.9e-54 214.9 126 81.7
C09p15250 Brassica napus HOM05D007918 ORTHO05D010025 3.9e-54 214.9 124 82.3
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 6.7e-54 214.2 130 80.0
AL3G53330 Arabidopsis lyrata HOM05D007918 ORTHO05D010025 4.0e-51 204.9 126 79.4
AT2G20362 Arabidopsis thaliana HOM05D007918 ORTHO05D010025 1.5e-50 203.0 126 78.6
Carub.0003s3475 Capsella rubella HOM05D007918 ORTHO05D010025 3.4e-50 201.8 124 77.4
THA.LOC104814533 Tarenaya hassleriana HOM05D007918 ORTHO05D010025 5.9e-34 147.9 123 60.2
BcaB03g16829 Brassica carinata HOM05D007918 ORTHO05D010025 1.8e-27 126.3 96 68.8
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 2.8e-12 75.9 101 44.6
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 3.7e-12 75.5 112 43.8
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 8.2e-12 74.3 98 44.9
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 1.1e-11 73.9 96 49.0
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 1.8e-11 73.2 95 46.3
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 2.4e-11 72.8 94 42.6
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 3.1e-11 72.4 119 38.7
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 5.3e-11 71.6 106 42.5
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 7.0e-11 71.2 103 43.7
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 9.1e-11 70.9 109 43.1
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 1.2e-10 70.5 85 45.9
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 1.6e-10 70.1 101 43.6
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 1.6e-10 70.1 90 45.6
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 2.0e-10 69.7 98 38.8
TPR.G20079 Trifolium pratense HOM05D007918 ORTHO05D010025 2.0e-10 69.7 98 43.9
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 2.6e-10 69.3 104 41.3
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 3.5e-10 68.9 67 50.7
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 4.5e-10 68.6 104 43.3
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 5.9e-10 68.2 100 42.0
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 5.9e-10 68.2 66 51.5
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.9e-10 68.2 103 43.7
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 1.0e-09 67.4 115 39.1
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 1.0e-09 67.4 115 39.1
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 1.0e-09 67.4 115 39.1
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 1.0e-09 67.4 75 45.3
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 5.0e-09 65.1 103 41.7
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 5.0e-09 65.1 99 42.4
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 5.0e-09 65.1 102 39.2
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 6.5e-09 64.7 101 37.6
MD05G1187800 Malus domestica HOM05D007918 ORTHO05D010025 6.5e-09 64.7 67 47.8
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 6.5e-09 64.7 111 35.1
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 1.1e-08 63.9 67 47.8
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 1.1e-08 63.9 101 39.6
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 1.5e-08 63.5 66 47.0
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 1.9e-08 63.2 60 51.7
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 1.9e-08 63.2 78 46.2
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.9e-08 63.2 78 46.2
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 2.5e-08 62.8 69 46.4
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 2.5e-08 62.8 133 33.8
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 3.2e-08 62.4 78 39.7
Prupe.8G214800 Prunus persica HOM05D007918 ORTHO05D010025 3.2e-08 62.4 117 39.3
Gorai.001G182300 Gossypium raimondii HOM05D007918 ORTHO05D010025 4.2e-08 62.0 85 42.4
FAN27G3434 Fragaria x ananassa HOM05D007918 ORTHO05D010025 5.5e-08 61.6 70 47.1
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 7.2e-08 61.2 74 45.9
Gohir.D07G159200 Gossypium hirsutum HOM05D007918 ORTHO05D010025 7.2e-08 61.2 115 40.0
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.2e-08 61.2 90 40.0
Gohir.A07G153050 Gossypium hirsutum HOM05D007918 ORTHO05D010025 9.4e-08 60.8 114 38.6
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 1.6e-07 60.1 66 48.5
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 1.6e-07 60.1 102 36.3
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 1.6e-07 60.1 102 34.3
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 2.1e-07 59.7 67 49.3
MBI07_g21057_MAGBIO Magnolia biondii HOM05D007918 ORTHO05D010025 2.1e-07 59.7 89 46.1
Manes.12G038300 Manihot esculenta HOM05D007918 ORTHO05D010025 2.7e-07 59.3 122 35.2
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 4.7e-07 58.5 69 42.0
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 1.4e-06 57.0 69 42.0
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 1.4e-06 57.0 80 37.5
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 4.0e-06 55.5 91 38.5


User provided reference genes

Program Settings