Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-310 1068.1 521 100.0
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 4.8e-307 1057.0 521 98.5
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 4.8e-307 1057.0 521 98.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-306 1055.8 521 98.3
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.3e-306 1053.5 521 97.9
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.0e-305 1051.6 521 97.9
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 6.9e-298 1026.5 521 95.0
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-295 1018.8 520 94.0
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 9.3e-295 1016.1 520 93.5
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 9.3e-295 1016.1 520 93.5
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.2e-294 1015.8 521 93.5
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 2.7e-294 1014.6 521 94.0
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 2.7e-294 1014.6 521 94.0
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 2.3e-293 1011.5 522 93.9
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 6.7e-293 1010.0 521 93.1
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 8.7e-293 1009.6 520 92.9
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.1e-292 1009.2 521 92.7
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-292 1009.2 520 92.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 5.3e-290 1000.3 525 92.8
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 9.0e-290 999.6 521 92.1
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 3.8e-288 994.2 521 91.0
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 6.7e-285 983.4 521 90.0
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 4.8e-275 950.7 521 86.6
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.3e-269 931.8 521 84.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 4.7e-262 907.5 521 81.6
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.6e-257 891.7 521 81.0
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 5.9e-257 890.6 521 79.8
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 8.5e-256 886.7 518 80.9
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.5e-256 886.7 521 80.0
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.1e-255 886.3 521 80.0
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 4.7e-254 880.9 521 79.1
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 4.7e-254 880.9 519 79.6
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 6.1e-254 880.6 521 79.5
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 6.1e-254 880.6 519 79.6
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 8.0e-254 880.2 517 79.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 7.5e-252 873.6 521 77.7
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 7.5e-252 873.6 519 79.2
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.7e-251 872.5 520 78.8
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.3e-251 870.5 521 78.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.2e-251 870.2 529 77.9
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.1e-250 869.8 529 78.1
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.1e-250 869.8 520 78.8
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.8e-250 869.0 519 78.4
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 2.4e-250 868.6 545 75.6
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.1e-250 868.2 529 77.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 3.1e-250 868.2 520 78.7
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 5.3e-250 867.5 519 79.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 9.1e-250 866.7 521 78.1
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.2e-249 866.3 521 78.9
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 2.7e-249 865.1 519 78.8
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.5e-249 864.8 521 77.9
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 5.9e-249 864.0 517 78.1
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.9e-249 864.0 529 77.5
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 2.9e-248 861.7 522 78.2
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-248 861.3 521 77.7
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.8e-248 861.3 521 77.7
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 5.0e-248 860.9 519 77.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 8.5e-248 860.1 517 78.9
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.9e-247 859.0 514 79.0
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.2e-247 857.8 521 78.1
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.1e-246 855.5 521 77.9
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.1e-246 855.5 545 74.9
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.3e-245 852.0 521 76.6
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 5.2e-245 850.9 521 77.7
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.8e-245 850.5 531 76.1
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 2.6e-244 848.6 522 77.0
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.4e-244 847.8 520 77.9
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 9.8e-244 846.7 522 77.4
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 2.2e-243 845.5 521 75.6
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 3.7e-243 844.7 521 76.2
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 4.8e-243 844.3 521 77.0
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 6.3e-243 844.0 521 76.4
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 4.1e-242 841.3 521 75.6
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 5.4e-242 840.9 521 76.6
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.2e-241 839.7 522 75.5
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.2e-241 839.7 519 75.7
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.5e-241 838.2 555 74.1
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.7e-240 835.9 521 75.4
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.5e-239 832.8 521 76.8
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 3.3e-239 831.6 527 75.0
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 5.5e-239 830.9 522 74.5
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 7.2e-239 830.5 521 75.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 9.5e-239 830.1 518 76.6
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 521 75.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 519 75.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 3.6e-238 828.2 521 75.0
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 6.1e-238 827.4 515 75.1
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 6.1e-238 827.4 517 75.2
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.4e-237 826.2 521 75.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 5.2e-237 824.3 520 74.2
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 1.2e-236 823.2 521 74.9
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.5e-236 822.8 521 74.9
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.8e-235 818.5 523 74.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 8.3e-235 817.0 518 75.3
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.1e-234 816.6 493 77.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.8e-234 815.8 518 73.7
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 7.0e-234 813.9 521 74.5
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 9.2e-234 813.5 523 74.4
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-233 812.8 467 81.6
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 5.9e-233 810.8 521 73.9
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.0e-232 810.1 521 75.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.5e-231 805.4 525 73.1
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 2.5e-231 805.4 521 74.3
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 5.6e-231 804.3 520 72.7
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.2e-230 803.1 522 72.8
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 2.1e-230 802.4 521 73.9
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.1e-230 802.4 520 72.1
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.8e-229 799.3 509 75.4
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 4.0e-229 798.1 521 72.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 3.7e-227 791.6 465 80.0
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 4.9e-227 791.2 478 77.4
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 4.9e-227 791.2 531 71.6
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 2.4e-226 788.9 505 75.4
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 5.4e-226 787.7 468 79.3
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 7.0e-226 787.3 520 71.5
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.2e-225 786.6 467 80.3
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-225 786.2 505 74.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.8e-225 783.9 491 75.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.7e-224 782.7 519 73.0
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 8.6e-224 780.4 550 69.3
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.9e-223 779.2 516 71.9
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.6e-222 775.0 517 70.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 4.0e-221 771.5 554 68.6
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 8.9e-221 770.4 471 76.4
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 1.2e-220 770.0 470 76.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-220 770.0 521 71.4
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.9e-218 762.7 520 69.8
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 4.1e-218 761.5 562 68.5
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.9e-216 755.0 521 69.9
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.5e-215 753.1 519 69.9
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 4.3e-215 751.5 521 69.5
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.6e-214 748.4 521 69.5
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.3e-213 745.7 574 64.5
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 6.8e-213 744.2 521 69.1
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 8.3e-211 737.3 521 68.9
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 2.4e-210 735.7 521 68.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 5.4e-210 734.6 521 68.9
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 5.8e-204 714.5 541 64.9
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 2.6e-196 689.1 520 65.4
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.2e-193 680.2 521 63.9
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.1e-189 667.2 504 68.5
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 3.8e-187 658.7 383 79.9
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 2.3e-184 649.4 381 79.5
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 6.9e-181 637.9 383 77.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 4.9e-179 631.7 481 63.6
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.5e-177 625.5 562 57.7
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.8e-176 623.2 481 64.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 2.6e-172 609.4 487 59.3
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 2.8e-166 589.3 447 62.0
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 4.8e-166 588.6 293 96.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 5.0e-155 552.0 473 56.2
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 6.1e-153 545.0 513 54.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 3.5e-140 502.7 353 68.8
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.1e-130 471.1 286 76.2
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.7e-126 456.1 292 73.6
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 3.8e-123 446.0 289 74.0
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.2e-121 441.0 266 75.2
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.6e-121 440.7 289 74.7
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 6.6e-107 392.1 246 73.2
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 5.6e-98 362.5 245 72.7
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.7e-78 297.7 204 69.1
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 8.2e-57 225.7 132 77.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.4e-56 224.9 472 32.6
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.9e-54 217.2 467 31.3
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 5.9e-39 166.4 152 51.3
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.9e-38 164.1 205 47.8
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.1e-34 152.1 109 66.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.0e-27 127.5 86 70.9
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 4.2e-21 107.1 58 81.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.7e-20 103.6 141 46.8
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 6.8e-19 99.8 60 75.0
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 3.4e-18 97.4 156 35.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.2e-13 80.5 165 37.0
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 3.5e-07 60.8 55 58.2
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 5.9e-07 60.1 66 48.5
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 7.7e-07 59.7 37 75.7


User provided reference genes

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