Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34741 Brassica carinata HOM05D001361 ORTHO05D005105 4.1e-156 554.7 277 100.0
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 5.7e-25 119.0 143 55.9
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 4.5e-22 109.4 108 62.0
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 3.2e-20 103.2 145 50.3
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 9.5e-20 101.7 145 50.3
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 1.2e-19 101.3 113 60.2
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 1.2e-19 101.3 110 60.9
A08p26450 Brassica napus HOM05D001361 ORTHO05D005105 4.7e-19 99.4 140 49.3
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 1.2e-17 94.7 113 59.3
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 2.0e-17 94.0 144 48.6
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 2.0e-17 94.0 110 60.0
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 3.1e-15 86.7 108 54.6
Aa31LG7G9930 Aethionema arabicum HOM05D001361 ORTHO05D005105 9.2e-15 85.1 121 51.2
Aa31LG7G9940 Aethionema arabicum HOM05D001361 ORTHO05D005105 2.7e-14 83.6 156 44.2
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 2.9e-13 80.1 109 53.2
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 3.8e-13 79.7 102 51.0
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 6.6e-13 79.0 143 42.0
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 1.5e-12 77.8 109 52.3
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 1.5e-12 77.8 109 52.3
Carub.0001s2580 Capsella rubella HOM05D001361 ORTHO05D005105 1.5e-12 77.8 143 43.4
BolC5t31315H Brassica oleracea HOM05D001361 ORTHO05D005105 1.0e-10 71.6 94 53.2
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 4.0e-10 69.7 108 47.2
BcaC06g34274 Brassica carinata HOM05D001364 ORTHO05D017670 2.6e-09 67.0 34 97.1
CARHR026840 Cardamine hirsuta HOM05D001361 ORTHO05D005105 2.6e-09 67.0 108 50.0
AT1G24265 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 1.3e-08 64.7 105 47.6
C07p30920 Brassica napus HOM05D001364 ORTHO05D017670 2.2e-08 63.9 32 96.9
Sp1g23510 Schrenkiella parvula HOM05D001361 ORTHO05D005105 2.9e-08 63.5 105 43.8
C03p44760 Brassica napus HOM05D001364 ORTHO05D017670 1.1e-07 61.6 32 93.8
BolC3t16739H Brassica oleracea HOM05D001364 ORTHO05D017670 1.1e-07 61.6 32 93.8
Thhalv10008078m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 1.8e-07 60.8 42 81.0
BcaC05g26540 Brassica carinata HOM05D001361 ORTHO05D005105 3.2e-07 60.1 87 50.6
C05p25960 Brassica napus HOM05D001361 ORTHO05D005105 2.0e-06 57.4 126 38.9
AL1G40670 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 2.7e-06 57.0 105 41.9
BcaB01g05005 Brassica carinata HOM05D001188 ORTHO05D001032 3.5e-06 56.6 41 73.2
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 5.9e-06 55.8 85 49.4
AT5G16110 Arabidopsis thaliana HOM05D001188 ORTHO05D001032 7.8e-06 55.5 41 70.7
Carub.0006s1430 Capsella rubella HOM05D001188 ORTHO05D001032 7.8e-06 55.5 41 70.7
Carub.0055s0003 Capsella rubella HOM05D001188 ORTHO05D001032 7.8e-06 55.5 41 70.7
CARHR026830 Cardamine hirsuta HOM05D001361 ORTHO05D005105 7.8e-06 55.5 149 38.3
Thhalv10014345m.g Eutrema salsugineum HOM05D001188 ORTHO05D001032 7.8e-06 55.5 41 70.7
Sp6g28030 Schrenkiella parvula HOM05D001188 ORTHO05D001032 7.8e-06 55.5 41 70.7


User provided reference genes

Program Settings