Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34629 Brassica carinata HOM05D007568 ORTHO05D009779 7.0e-127 457.2 220 100.0
C01p17360 Brassica napus HOM05D007568 ORTHO05D009779 3.1e-58 229.2 246 48.4
C03p86040 Brassica napus HOM05D007568 ORTHO05D009779 8.5e-56 221.1 246 47.2
BcaB07g31875 Brassica carinata HOM05D007568 ORTHO05D009779 4.5e-41 172.2 242 39.7
BcaB05g25263 Brassica carinata HOM05D007568 ORTHO05D009779 8.5e-40 167.9 242 38.8
C02p26050 Brassica napus HOM05D007568 ORTHO05D009779 1.9e-39 166.8 250 37.6
A05p27540 Brassica napus HOM05D007568 ORTHO05D009779 3.2e-39 166.0 250 37.2
BraA09t40709Z Brassica rapa HOM05D007568 ORTHO05D009779 3.2e-39 166.0 245 38.8
BolC4t25354H Brassica oleracea HOM05D007568 ORTHO05D009779 6.1e-38 161.8 249 36.9
C02p26010 Brassica napus HOM05D007568 ORTHO05D009779 2.2e-35 153.3 208 38.9
BcaC01g06154 Brassica carinata HOM05D007568 ORTHO05D009779 8.3e-35 151.4 247 37.7
BcaB04g18340 Brassica carinata HOM05D007568 ORTHO05D009779 9.1e-34 147.9 235 38.7
C09p27130 Brassica napus HOM05D007568 ORTHO05D009779 2.0e-33 146.7 243 36.6
BcaB04g20792 Brassica carinata HOM05D007568 ORTHO05D009779 2.7e-33 146.4 220 38.6
BcaC02g08832 Brassica carinata HOM05D007568 ORTHO05D009779 2.7e-33 146.4 238 37.0
C03p18690 Brassica napus HOM05D007568 ORTHO05D009779 2.2e-32 143.3 243 35.8
BolC9t55448H Brassica oleracea HOM05D007568 ORTHO05D009779 6.5e-32 141.7 243 35.8
BolC3t14260H Brassica oleracea HOM05D007568 ORTHO05D009779 8.5e-32 141.4 243 35.8
A02p32020 Brassica napus HOM05D007568 ORTHO05D009779 3.2e-31 139.4 243 35.0
BraA02t08213Z Brassica rapa HOM05D007568 ORTHO05D009779 3.2e-31 139.4 243 35.0
A08p24970 Brassica napus HOM05D007568 ORTHO05D009779 4.7e-30 135.6 244 34.0
A03p66080 Brassica napus HOM05D007568 ORTHO05D009779 1.4e-29 134.0 218 36.2
A05p17030 Brassica napus HOM05D007568 ORTHO05D009779 1.4e-29 134.0 218 36.2
A01p06890 Brassica napus HOM05D007568 ORTHO05D009779 4.0e-29 132.5 218 35.8
C07p00760 Brassica napus HOM05D007568 ORTHO05D009779 2.2e-27 126.7 240 32.5
A03p66230 Brassica napus HOM05D007568 ORTHO05D009779 4.9e-27 125.6 243 33.7
BolC8t51027H Brassica oleracea HOM05D007568 ORTHO05D009779 3.1e-26 122.9 222 34.2
BcaB02g11011 Brassica carinata HOM05D007568 ORTHO05D009779 9.2e-26 121.3 224 34.4
BcaC01g01043 Brassica carinata HOM05D007568 ORTHO05D009779 1.2e-25 120.9 221 35.3
BcaC09g50027 Brassica carinata HOM05D007568 ORTHO05D009779 8.6e-24 114.8 113 50.4
BolC2t10349H Brassica oleracea HOM05D007568 ORTHO05D009779 4.3e-23 112.5 202 33.7
BcaB04g18026 Brassica carinata HOM05D007568 ORTHO05D009779 1.5e-20 104.0 188 31.4
BolC6t36043H Brassica oleracea HOM05D007568 ORTHO05D009779 7.5e-20 101.7 97 50.5
BcaC09g50463 Brassica carinata HOM05D007568 ORTHO05D009779 1.1e-18 97.8 173 35.8
A07p36520 Brassica napus HOM05D007568 ORTHO05D009779 1.4e-18 97.4 216 31.5
BolC7t45261H Brassica oleracea HOM05D007568 ORTHO05D009779 2.4e-18 96.7 173 36.4
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 5.4e-18 95.5 111 43.2
C01p25160 Brassica napus HOM05D030822 ORTHO05D009779 7.8e-17 91.7 172 33.7
BolC4t24150H Brassica oleracea HOM05D000353 ORTHO05D000174 1.3e-16 90.9 111 42.3
BraA03t15678Z Brassica rapa HOM05D007568 ORTHO05D009779 1.7e-16 90.5 182 32.4
BraA03t15576Z Brassica rapa HOM05D007568 ORTHO05D009779 2.5e-15 86.7 69 53.6
BcaC05g29164 Brassica carinata HOM05D007568 ORTHO05D009779 3.3e-15 86.3 224 30.4
A07p20380 Brassica napus HOM05D007568 ORTHO05D009779 4.3e-15 85.9 90 47.8
BolC5t34087H Brassica oleracea HOM05D007568 ORTHO05D009779 5.6e-15 85.5 66 59.1
AL1G59760 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 2.1e-14 83.6 214 29.0
AL5G12750 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 2.1e-14 83.6 214 29.0
AL7G11610 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 2.1e-14 83.6 214 29.0
AL4G20680 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 4.7e-14 82.4 231 27.7
AL2G22210 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 1.0e-13 81.3 227 27.3
BcaB08g34681 Brassica carinata HOM05D009963 ORTHO05D009779 1.8e-13 80.5 108 37.0
BcaC05g26582 Brassica carinata HOM05D007568 ORTHO05D009779 1.8e-13 80.5 173 30.6
BolC4t26648H Brassica oleracea HOM05D007568 ORTHO05D009779 3.1e-13 79.7 170 29.4
AL1G50260 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 4.0e-13 79.3 226 28.8
BcaNung06627 Brassica carinata HOM05D007568 ORTHO05D009779 1.5e-12 77.4 71 46.5
BolC4t23434H Brassica oleracea HOM05D007568 ORTHO05D009779 1.5e-12 77.4 69 50.7
C03p28750 Brassica napus HOM05D007568 ORTHO05D041881 2.0e-12 77.0 158 31.6
BolC3t15795H Brassica oleracea HOM05D007568 ORTHO05D041881 2.0e-12 77.0 158 31.6
C03p19550 Brassica napus HOM05D007568 ORTHO05D009779 4.4e-12 75.9 159 31.4
AL2G19880 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 9.8e-12 74.7 235 26.0
AL6G41880 Arabidopsis lyrata HOM05D011333 ORTHO05D011313 3.2e-10 69.7 192 27.1
BcaB05g23080 Brassica carinata HOM05D009963 ORTHO05D013780 1.6e-09 67.4 107 36.4
BcaC02g09404 Brassica carinata HOM05D007568 ORTHO05D009779 1.6e-09 67.4 61 45.9
C03p18140 Brassica napus HOM05D007568 ORTHO05D009779 2.0e-09 67.0 150 30.0
BcaNung01428 Brassica carinata HOM05D007568 ORTHO05D009779 3.5e-09 66.2 116 36.2
Carub.0002s1156 Capsella rubella HOM05D011333 ORTHO05D011313 6.0e-09 65.5 242 24.4
C06p20120 Brassica napus HOM05D007568 ORTHO05D009779 7.8e-09 65.1 143 28.0
C04p16590 Brassica napus HOM05D030822 ORTHO05D009779 1.7e-08 63.9 139 32.4
AL2G23140 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 3.0e-08 63.2 226 21.2
BcaB05g24631 Brassica carinata HOM05D007568 ORTHO05D009779 3.9e-08 62.8 183 25.7
C01p49430 Brassica napus HOM05D007568 ORTHO05D009779 5.0e-08 62.4 59 44.1
C04p50500 Brassica napus HOM05D007568 ORTHO05D009779 6.6e-08 62.0 92 37.0
BolC2t09295H Brassica oleracea HOM05D007568 ORTHO05D009779 6.6e-08 62.0 96 33.3
C09p36930 Brassica napus HOM05D007568 ORTHO05D009779 8.6e-08 61.6 169 26.0
BolC9t56523H Brassica oleracea HOM05D007568 ORTHO05D009779 8.6e-08 61.6 169 26.0
C03p34820 Brassica napus HOM05D000042 ORTHO05D000028 1.1e-07 61.2 118 30.5
AL2G19910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.5e-07 60.8 232 23.7
AL5G12720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.5e-07 60.1 232 23.7
AL6G41910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.5e-07 60.1 232 23.7
BcaC02g07795 Brassica carinata HOM05D000353 ORTHO05D000174 3.3e-07 59.7 106 31.1
A04p34410 Brassica napus HOM05D007568 ORTHO05D009779 3.3e-07 59.7 103 32.0
BolC9t55696H Brassica oleracea HOM05D000353 ORTHO05D000174 3.3e-07 59.7 106 31.1
AL9U11490 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 4.3e-07 59.3 232 23.7
BolC2t11013H Brassica oleracea HOM05D007568 ORTHO05D009779 4.3e-07 59.3 68 45.6
AL2G22240 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.3e-07 58.5 232 23.7
Carub.0001s3686 Capsella rubella HOM05D012762 ORTHO05D011313 1.2e-06 57.8 218 27.1
AL8G20230 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.6e-06 57.4 197 22.8
C03p46930 Brassica napus HOM05D000353 ORTHO05D000174 2.8e-06 56.6 106 30.2


User provided reference genes

Program Settings