Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34622 Brassica carinata HOM05D002383 ORTHO05D002515 1.2e-46 189.5 95 100.0
BcaC06g33793 Brassica carinata HOM05D002383 ORTHO05D002515 4.4e-33 144.4 114 71.1
C07p36820 Brassica napus HOM05D002383 ORTHO05D002515 4.4e-33 144.4 114 71.1
BolC7t44195H Brassica oleracea HOM05D002383 ORTHO05D002515 4.4e-33 144.4 114 71.1
BolC9t53287H Brassica oleracea HOM05D002383 ORTHO05D002515 3.7e-32 141.4 112 66.1
Sp2g16760 Schrenkiella parvula HOM05D002383 ORTHO05D002515 4.8e-32 141.0 111 68.5
BcaC04g23898 Brassica carinata HOM05D002383 ORTHO05D002515 1.4e-31 139.4 112 66.1
C09p03670 Brassica napus HOM05D002383 ORTHO05D002515 1.4e-31 139.4 112 66.1
BcaB04g19442 Brassica carinata HOM05D002383 ORTHO05D002515 5.3e-31 137.5 112 65.2
BraA06t27021Z Brassica rapa HOM05D002383 ORTHO05D002515 9.1e-31 136.7 110 69.1
Thhalv10005308m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 9.1e-31 136.7 110 65.5
BcaC06g30972 Brassica carinata HOM05D002383 ORTHO05D002515 1.0e-29 133.3 115 67.8
CARHR149050 Cardamine hirsuta HOM05D002383 ORTHO05D002515 1.7e-29 132.5 111 63.1
BcaC06g30970 Brassica carinata HOM05D002383 ORTHO05D002515 6.5e-29 130.6 115 68.7
A09p03450 Brassica napus HOM05D002383 ORTHO05D002515 4.0e-26 121.3 110 61.8
BraA09t35983Z Brassica rapa HOM05D002383 ORTHO05D002515 5.2e-26 120.9 110 61.8
Aa31LG2G5040 Aethionema arabicum HOM05D002383 ORTHO05D002515 2.2e-24 115.5 111 55.9
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 8.2e-24 113.6 112 57.1
AL5G17050 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 1.1e-23 113.2 112 58.0
Aa31LG2G5060 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.8e-23 112.5 111 53.2
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 3.1e-23 111.7 113 59.3
AL7G49370 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 2.0e-22 109.0 113 56.6
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 1.0e-21 106.7 112 57.1
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 1.0e-21 106.7 112 57.1
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 1.0e-21 106.7 112 57.1
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 1.3e-21 106.3 112 57.1
C07p36770 Brassica napus HOM05D002383 ORTHO05D002515 5.0e-21 104.4 75 76.0
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 1.9e-20 102.4 112 57.1
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 2.5e-20 102.1 112 56.2
AT3G27630 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 5.5e-20 100.9 109 55.0
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 9.4e-20 100.1 112 53.6
Carub.0007s3513 Capsella rubella HOM05D002383 ORTHO05D002515 4.7e-19 97.8 117 53.0
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.3e-16 89.7 113 51.3
Carub.0005s0607 Capsella rubella HOM05D002383 ORTHO05D002515 2.2e-16 89.0 115 50.4
THA.LOC104805371 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 1.1e-15 86.7 119 49.6
THA.LOC104825323 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 4.1e-15 84.7 110 48.2
RcHm_v2.0_Chr2g0172811 Rosa chinensis HOM05D002383 ORTHO05D002515 4.5e-14 81.3 108 49.1
FvH4_6g51230 Fragaria vesca HOM05D002383 ORTHO05D002515 7.7e-14 80.5 108 50.0
FAN02G4557 Fragaria x ananassa HOM05D002383 ORTHO05D002515 7.7e-14 80.5 108 50.0
FAN14G3744 Fragaria x ananassa HOM05D002383 ORTHO05D002515 7.7e-14 80.5 108 50.0
FAN05G3597 Fragaria x ananassa HOM05D002383 ORTHO05D002515 5.0e-13 77.8 108 49.1
Prupe.3G291500 Prunus persica HOM05D002383 ORTHO05D002515 1.0e-10 70.1 107 44.9
Cpa.g.sc130.83 Carica papaya HOM05D002383 ORTHO05D002515 1.8e-10 69.3 105 45.7
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 1.8e-10 69.3 108 44.4
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 2.3e-10 68.9 107 44.9
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 3.0e-10 68.6 107 44.9
C07p36790 Brassica napus HOM05D002383 ORTHO05D002515 4.0e-10 68.2 57 71.9
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 6.8e-10 67.4 108 40.7
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 6.8e-10 67.4 107 43.9
Rhsim10G0017000 Rhododendron simsii HOM05D002383 ORTHO05D002515 6.8e-10 67.4 108 43.5
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 8.8e-10 67.0 105 43.8
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 8.8e-10 67.0 107 43.9
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 1.2e-09 66.6 107 45.8
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.5e-09 66.2 110 44.5
Duzib268G1316 Durio zibethinus HOM05D002383 ORTHO05D002515 2.6e-09 65.5 109 40.4
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 5.7e-09 64.3 108 39.8
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 7.5e-09 63.9 107 43.9
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 7.5e-09 63.9 107 43.9
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 7.5e-09 63.9 110 41.8
Gorai.005G179500 Gossypium raimondii HOM05D002383 ORTHO05D002515 9.8e-09 63.5 109 40.4
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 9.8e-09 63.5 107 43.0
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 1.3e-08 63.2 109 39.4
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 1.3e-08 63.2 108 39.8
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 1.7e-08 62.8 108 44.4
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 2.2e-08 62.4 111 44.1
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 2.8e-08 62.0 108 42.6
CSS0002762 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 3.7e-08 61.6 112 42.9
Gohir.A09G029100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.7e-08 61.6 107 43.0
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 4.9e-08 61.2 110 41.8
Lalb_Chr02g0160501 Lupinus albus HOM05D002383 ORTHO05D002515 6.3e-08 60.8 97 44.3
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 8.3e-08 60.5 112 40.2
Gohir.D02G159400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 8.3e-08 60.5 109 38.5
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 8.3e-08 60.5 108 42.6
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 1.4e-07 59.7 109 39.4
SalBow7G3295 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.4e-07 59.7 112 42.9
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 1.8e-07 59.3 107 40.2
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 3.1e-07 58.5 108 38.9
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 3.1e-07 58.5 113 44.2
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 3.1e-07 58.5 107 39.3
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 4.1e-07 58.2 109 40.4
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 5.4e-07 57.8 109 39.4
Duzib147G0038 Durio zibethinus HOM05D002383 ORTHO05D002515 5.4e-07 57.8 103 41.7
Gohir.A03G136100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 5.4e-07 57.8 110 39.1
Manes.12G024000 Manihot esculenta HOM05D002383 ORTHO05D002515 7.0e-07 57.4 110 37.3
Hma1.2p1_0160F.1_g071240 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 9.2e-07 57.0 98 34.7
TWI18G1125 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 9.2e-07 57.0 110 37.3
Atru.chr6.2391 Acer truncatum HOM05D002383 ORTHO05D002515 1.2e-06 56.6 108 39.8
CiPaw.05G183200 Carya illinoinensis HOM05D002383 ORTHO05D002515 1.2e-06 56.6 98 36.7
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 1.2e-06 56.6 111 40.5
TWI75G1208 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.2e-06 56.6 104 39.4
Actinidia05994 Actinidia chinensis HOM05D002383 ORTHO05D002515 1.6e-06 56.2 99 38.4
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 2.0e-06 55.8 111 41.4
THA.LOC104809580 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 2.0e-06 55.8 98 39.8
CiPaw.06G068500 Carya illinoinensis HOM05D002383 ORTHO05D002515 2.7e-06 55.5 111 37.8
Manes.13G025600 Manihot esculenta HOM05D002383 ORTHO05D002515 2.7e-06 55.5 110 37.3
Rhsim08G0050700 Rhododendron simsii HOM05D002383 ORTHO05D002515 2.7e-06 55.5 110 37.3
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 3.5e-06 55.1 108 38.0
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 3.5e-06 55.1 92 39.1
TAR622G1076 Trochodendron aralioides HOM05D002383 ORTHO05D002515 3.5e-06 55.1 109 37.6
VMungo0251G0034 Vigna mungo HOM05D002383 ORTHO05D002515 3.5e-06 55.1 110 36.4
SGA_v2.0_scaffold224G42989 Striga asiatica HOM05D002383 ORTHO05D002515 4.5e-06 54.7 109 36.7
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 5.9e-06 54.3 109 37.6
Cfa009202 Carpinus fangiana HOM05D002383 ORTHO05D002515 7.8e-06 53.9 112 34.8
PGR083G1142 Punica granatum HOM05D002383 ORTHO05D002515 7.8e-06 53.9 111 40.5


User provided reference genes

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