Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.4e-263 912.5 502 100.0
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 1.9e-244 849.0 503 91.1
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 1.9e-244 849.0 503 91.1
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 7.5e-241 837.0 523 87.6
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.2e-238 829.7 511 90.8
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 8.5e-237 823.5 518 89.4
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 1.3e-224 783.1 518 83.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.0e-217 759.2 509 83.3
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.7e-216 756.1 500 84.4
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 2.3e-213 745.7 516 82.9
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 3.3e-212 741.9 513 80.5
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.2e-211 737.6 543 79.7
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 3.1e-210 735.3 504 81.2
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 7.5e-209 730.7 521 79.7
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.7e-208 729.6 516 80.0
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 8.3e-208 727.2 514 79.6
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 8.3e-208 727.2 514 79.6
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.5e-198 695.3 503 76.1
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 8.1e-179 630.9 506 73.1
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 4.0e-178 628.6 382 87.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.9e-167 593.2 468 70.9
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 5.7e-156 555.1 527 60.9
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.4e-154 549.7 483 68.5
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 9.0e-154 547.7 490 67.3
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.2e-153 547.4 503 61.0
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 1.0e-152 544.3 491 63.3
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 5.0e-152 542.0 526 64.1
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.9e-151 540.0 513 60.2
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 2.5e-151 539.7 480 64.2
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 7.2e-151 538.1 494 66.0
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 9.4e-151 537.7 469 67.8
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 9.4e-151 537.7 480 64.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.6e-150 535.4 525 59.2
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 6.1e-150 535.0 474 65.2
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 2.3e-149 533.1 516 58.5
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 2.2e-147 526.6 523 57.6
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.7e-147 525.8 494 61.7
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.1e-146 524.2 523 62.7
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.4e-146 523.9 519 59.7
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.8e-146 523.5 513 58.7
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 2.4e-146 523.1 523 62.5
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 6.9e-146 521.5 519 59.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 9.1e-146 521.2 516 57.4
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.1e-143 514.2 522 57.9
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.1e-143 514.2 518 58.5
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.4e-143 513.8 513 57.3
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 5.5e-143 511.9 518 59.1
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 9.4e-143 511.1 518 58.7
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 7.9e-142 508.1 536 58.6
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.0e-141 507.7 518 60.6
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.4e-141 507.3 511 61.6
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.9e-141 505.8 454 65.6
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 5.1e-141 505.4 477 63.1
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 6.7e-141 505.0 486 59.5
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 3.3e-140 502.7 517 57.3
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.3e-139 500.7 511 60.5
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 8.2e-139 498.0 463 61.3
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.8e-138 496.9 571 54.5
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.2e-137 494.2 507 58.0
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 3.4e-137 492.7 515 59.4
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 5.9e-137 491.9 511 60.1
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 7.7e-137 491.5 497 58.1
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.9e-135 486.9 522 55.2
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.9e-135 486.9 533 54.8
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 7.2e-135 485.0 411 64.7
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.2e-134 484.2 520 54.8
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 2.1e-134 483.4 516 58.5
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 8.0e-134 481.5 504 56.2
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.8e-133 480.3 530 57.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.8e-133 480.3 508 59.1
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 2.3e-133 479.9 512 55.3
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 3.9e-133 479.2 514 54.1
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.2e-133 478.8 486 56.0
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.3e-132 476.1 475 57.7
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 7.4e-132 474.9 527 53.5
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 7.4e-132 474.9 524 54.4
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.2e-131 473.4 476 59.2
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.2e-129 467.6 472 57.0
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.0e-129 466.8 415 61.7
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.5e-129 465.7 473 58.8
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 5.9e-129 465.3 525 56.2
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.0e-128 464.5 516 52.5
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 2.9e-128 463.0 512 54.9
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 6.5e-128 461.8 532 51.7
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 7.2e-127 458.4 513 54.2
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 8.0e-126 454.9 511 54.0
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 8.0e-126 454.9 411 61.6
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 8.0e-126 454.9 415 61.4
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.8e-125 453.8 393 62.6
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 2.3e-125 453.4 405 60.7
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.0e-125 453.0 411 61.3
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 5.2e-125 452.2 496 58.5
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.0e-124 450.3 472 56.4
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.4e-124 449.1 412 60.2
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 5.7e-124 448.7 515 52.6
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 6.3e-123 445.3 400 60.2
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.8e-122 443.7 387 61.8
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.0e-121 440.3 504 52.0
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.7e-121 439.9 480 54.6
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 3.8e-120 436.0 511 54.8
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 1.5e-119 434.1 358 66.2
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.8e-117 427.2 410 58.0
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 2.3e-117 426.8 475 52.6
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 1.3e-115 421.0 411 56.0
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 8.3e-115 418.3 419 57.3
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.5e-113 412.9 397 58.9
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.3e-107 394.4 368 60.6
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 9.2e-106 388.3 384 60.7
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 2.3e-104 383.6 525 52.0
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 7.8e-97 358.6 382 52.9
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 5.0e-96 355.9 401 56.9
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.2e-94 351.3 527 42.5
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 7.5e-92 342.0 535 43.7
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 5.2e-85 319.3 488 39.1
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 2.6e-84 317.0 476 39.7
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.2e-83 313.9 337 51.3
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.2e-81 308.1 276 61.6
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 2.7e-81 307.0 276 61.6
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 3.5e-73 280.0 500 39.2
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.0e-72 278.5 279 54.5
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.6e-72 275.8 314 57.6
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.5e-71 274.6 236 61.0
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.6e-70 270.0 362 50.8
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.0e-69 266.5 318 51.6
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 3.9e-64 250.0 607 33.6
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 5.6e-63 246.1 297 48.8
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 1.3e-56 224.9 180 66.1
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 6.4e-51 206.1 328 45.7
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 5.8e-44 183.0 468 34.6
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 2.7e-41 174.1 145 63.4
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 2.7e-41 174.1 230 59.6
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 8.2e-38 162.5 162 54.9
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.5e-36 158.3 148 60.8
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.2e-25 122.1 109 56.9
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.4e-24 118.6 173 53.2
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 8.2e-22 109.4 191 52.9
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 1.4e-21 108.6 110 56.4
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 1.4e-21 108.6 110 56.4
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 9.1e-21 105.9 129 46.5
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 3.9e-16 90.5 86 57.0
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 1.1e-15 89.0 57 71.9
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.1e-15 89.0 128 46.1
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-13 81.3 90 52.2
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.1e-13 80.9 149 38.3
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 5.3e-13 80.1 109 45.9
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.0e-11 75.9 75 62.7
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 6.5e-11 73.2 73 57.5
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.2e-10 70.5 78 51.3
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 4.7e-09 67.0 146 41.1
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.3e-08 64.7 140 35.0
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.5e-07 62.0 148 34.5
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.2e-06 58.2 143 32.9


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