Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 1.3e-57 226.1 112 100.0
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 3.0e-49 198.4 112 91.1
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 3.0e-49 198.4 112 91.1
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 7.4e-48 193.7 112 89.3
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 7.4e-48 193.7 112 89.3
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 8.2e-47 190.3 112 88.4
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 8.2e-47 190.3 112 88.4
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 2.2e-44 182.2 100 91.0
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 2.2e-44 182.2 100 91.0
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 2.2e-44 182.2 100 91.0
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 2.2e-44 182.2 100 91.0
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 5.0e-44 181.0 100 90.0
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 2.5e-43 178.7 100 90.0
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 1.2e-42 176.4 100 90.0
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 2.1e-42 175.6 100 88.0
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 2.1e-42 175.6 100 88.0
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.3e-41 172.2 101 86.1
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 1.7e-39 166.0 100 83.0
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 3.1e-38 161.8 99 81.8
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 2.6e-37 158.7 100 81.0
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 1.9e-35 152.5 100 76.0
BcaC01g03061 Brassica carinata HOM05D003638 ORTHO05D003202 3.6e-34 148.3 91 83.5
C03p56510 Brassica napus HOM05D003638 ORTHO05D003202 3.6e-34 148.3 91 83.5
BolC3t17937H Brassica oleracea HOM05D003638 ORTHO05D003202 3.6e-34 148.3 91 83.5
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 3.9e-33 144.8 111 70.3
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 1.5e-24 116.3 103 59.2
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 1.2e-18 96.7 99 54.5
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 8.0e-18 94.0 99 53.5
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 1.8e-17 92.8 111 53.2
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 6.7e-17 90.9 99 56.6
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 2.0e-16 89.4 100 58.0
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.6e-16 89.0 99 52.5
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 2.6e-16 89.0 107 49.5
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 3.3e-16 88.6 108 52.8
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 7.5e-16 87.4 101 52.5
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 9.7e-16 87.0 99 52.5
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 9.7e-16 87.0 99 50.5
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 1.3e-15 86.7 109 47.7
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 2.8e-15 85.5 104 49.0
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 2.8e-15 85.5 94 55.3
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 3.7e-15 85.1 99 56.6
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 4.8e-15 84.7 99 56.6
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 4.8e-15 84.7 103 49.5
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 4.8e-15 84.7 107 53.3
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 6.3e-15 84.3 94 54.3
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 8.2e-15 84.0 99 50.5
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 8.2e-15 84.0 99 50.5
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 8.2e-15 84.0 99 54.5
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 1.8e-14 82.8 99 53.5
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.8e-14 82.8 99 52.5
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.4e-14 82.4 100 52.0
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 3.1e-14 82.0 100 52.0
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 9.1e-14 80.5 94 52.1
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 2.0e-13 79.3 99 48.5
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 2.7e-13 79.0 101 47.5
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 2.7e-13 79.0 97 52.6
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 4.5e-13 78.2 97 51.5
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 5.9e-13 77.8 95 52.6
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 5.9e-13 77.8 99 49.5
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 5.9e-13 77.8 99 49.5
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.0e-12 77.0 95 50.5
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 1.0e-12 77.0 99 49.5
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.7e-12 76.3 99 48.5
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.7e-12 76.3 94 50.0
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 2.9e-12 75.5 101 45.5
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 5.0e-12 74.7 96 51.0
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 1.5e-11 73.2 99 52.5
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 1.5e-11 73.2 98 46.9
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.5e-11 72.4 100 43.0
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 3.2e-11 72.0 105 47.6
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 4.2e-11 71.6 101 48.5
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 48.5
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 48.5
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 48.5
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 48.5
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.2e-11 71.6 99 48.5
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 4.2e-11 71.6 100 46.0
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 4.2e-11 71.6 104 42.3
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 5.5e-11 71.2 99 43.4
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 5.5e-11 71.2 92 48.9
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 5.5e-11 71.2 98 46.9
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 5.5e-11 71.2 98 44.9
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 5.5e-11 71.2 95 48.4
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 9.4e-11 70.5 100 46.0
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 9.4e-11 70.5 103 50.5
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 1.2e-10 70.1 96 44.8
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.6e-10 69.7 99 47.5
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.6e-10 69.7 101 46.5
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 1.6e-10 69.7 98 45.9
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 2.1e-10 69.3 98 43.9
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.6e-10 68.6 96 44.8
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 3.6e-10 68.6 99 46.5
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.6e-10 68.6 95 49.5
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 4.7e-10 68.2 98 44.9
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 6.1e-10 67.8 100 45.0
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 6.1e-10 67.8 100 46.0
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 8.0e-10 67.4 96 49.0
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 8.0e-10 67.4 100 46.0
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 8.0e-10 67.4 101 45.5
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 8.0e-10 67.4 94 46.8
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.0e-09 67.0 96 44.8
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 100 48.0
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 1.0e-09 67.0 99 45.5
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.0e-09 67.0 95 50.5
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.4e-09 66.6 100 47.0
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 1.4e-09 66.6 101 45.5
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 1.4e-09 66.6 101 45.5
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 1.4e-09 66.6 101 45.5
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.4e-09 66.6 95 45.3
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.4e-09 66.6 95 48.4
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.4e-09 66.6 94 46.8
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 1.4e-09 66.6 94 46.8
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 1.8e-09 66.2 100 47.0
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 1.8e-09 66.2 98 45.9
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.8e-09 66.2 102 47.1
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 2.3e-09 65.9 100 44.0
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 2.3e-09 65.9 103 45.6
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 3.0e-09 65.5 97 47.4
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 4.0e-09 65.1 95 47.4
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 4.0e-09 65.1 101 42.6
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 4.0e-09 65.1 97 51.5
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 5.2e-09 64.7 100 46.0
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.2e-09 64.7 100 45.0
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 8.8e-09 63.9 104 44.2
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 2.0e-08 62.8 60 55.0
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 2.0e-08 62.8 93 45.2
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 3.4e-08 62.0 95 45.3
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.4e-08 62.0 94 43.6
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 3.4e-08 62.0 96 45.8
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 4.4e-08 61.6 104 41.3
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 9.8e-08 60.5 104 41.3
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 9.8e-08 60.5 104 39.4
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 9.8e-08 60.5 103 40.8
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 9.8e-08 60.5 95 45.3
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 9.8e-08 60.5 96 46.9
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 1.3e-07 60.1 102 42.2
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 1.3e-07 60.1 95 43.2
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.3e-07 60.1 99 46.5
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.3e-07 60.1 99 46.5
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.7e-07 59.7 98 42.9
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 2.2e-07 59.3 93 44.1
HanXRQChr10g0315321 Helianthus annuus HOM05D003638 ORTHO05D003202 2.2e-07 59.3 99 44.4
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 2.8e-07 58.9 103 42.7
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.8e-07 58.9 98 42.9
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 4.8e-07 58.2 96 43.8
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 1.1e-06 57.0 102 44.1
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.4e-06 56.6 95 46.3
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 4.1e-06 55.1 103 41.7


User provided reference genes

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