Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-34 149.1 94 100.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 2.8e-32 141.7 93 78.5
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 2.8e-32 141.7 93 78.5
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 4.8e-32 141.0 93 78.5
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.8e-31 139.0 93 93.5
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-31 139.0 93 83.9
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.8e-31 139.0 93 83.9
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.8e-31 139.0 93 83.9
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.8e-31 139.0 95 78.9
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.8e-31 139.0 93 93.5
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.6e-30 135.2 93 91.4
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.4e-28 129.4 93 88.2
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 1.4e-28 129.4 94 74.5
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 2.7e-27 125.2 93 88.2
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 3.5e-27 124.8 91 90.1
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.5e-27 124.8 91 90.1
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 3.5e-27 124.8 91 90.1
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 3.5e-27 124.8 91 90.1
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 2.0e-22 109.0 93 78.5
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 2.6e-22 108.6 92 78.3
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 4.5e-22 107.8 93 76.3
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.0e-21 106.7 94 73.4
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.7e-21 105.9 93 61.3
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.7e-21 105.9 93 76.3
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.7e-21 105.9 93 76.3
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 6.5e-21 104.0 53 94.3
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 6.5e-21 104.0 92 64.1
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.4e-20 102.8 94 75.5
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.5e-20 102.1 92 76.1
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 4.2e-20 101.3 93 74.2
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 4.6e-19 97.8 92 73.9
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.6e-16 89.4 92 70.7
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 3.7e-16 88.2 95 56.8
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.8e-16 87.8 95 55.8
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.4e-15 85.5 94 55.3
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.4e-15 85.5 97 54.6
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 3.1e-15 85.1 94 56.4
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 5.3e-15 84.3 95 54.7
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.2e-14 83.2 94 54.3
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.5e-14 82.8 94 54.3
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.5e-14 82.8 94 54.3
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.0e-14 82.4 96 54.2
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.0e-14 82.4 94 52.1
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.6e-14 82.0 94 54.3
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 3.4e-14 81.6 93 54.8
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 5.9e-14 80.9 97 52.6
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 7.7e-14 80.5 95 53.7
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.3e-13 79.7 94 52.1
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.3e-13 79.7 99 55.6
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.3e-13 79.7 95 51.6
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.7e-13 79.3 98 50.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.2e-13 79.0 96 50.0
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.2e-13 79.0 96 54.2
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.2e-13 79.0 96 60.4
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.2e-13 79.0 93 53.8
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.2e-13 79.0 94 50.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.9e-13 78.6 96 54.2
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.8e-13 78.2 101 49.5
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 3.8e-13 78.2 95 53.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 5.0e-13 77.8 96 51.0
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 5.0e-13 77.8 93 53.8
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 6.5e-13 77.4 97 51.5
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 8.5e-13 77.0 95 50.5
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-12 76.3 94 52.1
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.4e-12 76.3 94 53.2
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.4e-12 76.3 94 53.2
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.9e-12 75.9 91 51.6
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.9e-12 75.9 95 52.6
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.5e-12 75.5 51 72.5
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 3.2e-12 75.1 94 58.5
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 51.1
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 5.5e-12 74.3 94 50.0
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 5.5e-12 74.3 93 49.5
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 7.2e-12 73.9 95 56.8
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 7.2e-12 73.9 97 48.5
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 9.4e-12 73.6 98 51.0
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 9.4e-12 73.6 98 50.0
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 9.4e-12 73.6 91 54.9
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.2e-11 73.2 93 51.6
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 2.1e-11 72.4 92 53.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.1e-11 72.4 95 51.6
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.6e-11 71.6 93 50.5
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 3.6e-11 71.6 92 50.0
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.6e-11 71.6 94 50.0
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.6e-11 71.6 93 50.5
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 4.6e-11 71.2 95 48.4
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 1.0e-10 70.1 93 48.4
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 1.4e-10 69.7 90 50.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.8e-10 69.3 98 48.0
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 3.0e-10 68.6 93 49.5
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.0e-10 68.6 93 49.5
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.9e-10 68.2 98 46.9
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 5.1e-10 67.8 95 44.2
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 5.1e-10 67.8 95 44.2
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 6.7e-10 67.4 99 44.4
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 6.7e-10 67.4 96 43.8
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 6.7e-10 67.4 96 49.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 8.8e-10 67.0 98 48.0
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.1e-09 66.6 95 52.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.1e-09 66.6 93 44.1
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 1.5e-09 66.2 89 56.2
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 1.5e-09 66.2 94 43.6
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.5e-09 66.2 99 49.5
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 2.0e-09 65.9 89 50.6
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.0e-09 65.9 92 45.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.5e-09 65.5 88 42.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.5e-09 65.5 98 46.9
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 2.5e-09 65.5 100 51.0
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.3e-09 65.1 52 63.5
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 4.3e-09 64.7 89 44.9
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.7e-09 64.3 95 44.2
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 5.7e-09 64.3 93 45.2
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.7e-09 64.3 98 46.9
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 7.4e-09 63.9 94 46.8
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 7.4e-09 63.9 95 47.4
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 7.4e-09 63.9 99 45.5
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 7.4e-09 63.9 93 45.2
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 7.4e-09 63.9 102 42.2
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 7.4e-09 63.9 50 62.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 9.7e-09 63.5 94 45.7
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 9.7e-09 63.5 96 62.5
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.7e-08 62.8 92 43.5
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.7e-08 62.8 98 45.9
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 1.7e-08 62.8 90 47.8
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.7e-08 62.8 98 44.9
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 2.2e-08 62.4 92 44.6
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.2e-08 62.4 94 48.9
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.2e-08 62.4 94 48.9
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.2e-08 62.4 94 45.7
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 2.2e-08 62.4 94 45.7
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.2e-08 62.4 95 48.4
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.8e-08 62.0 103 41.7
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-08 61.6 98 45.9
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-08 61.6 98 45.9
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-08 61.6 96 51.0
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 3.7e-08 61.6 93 44.1
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 4.8e-08 61.2 96 44.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 4.8e-08 61.2 90 47.8
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 6.3e-08 60.8 94 47.9
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 6.3e-08 60.8 94 47.9
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 6.3e-08 60.8 97 40.2
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 6.3e-08 60.8 96 43.8
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 8.2e-08 60.5 93 45.2
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 1.1e-07 60.1 97 40.2
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.1e-07 60.1 95 43.2
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.8e-07 59.3 92 44.6
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 1.8e-07 59.3 92 45.7
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.4e-07 58.9 89 40.4
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.4e-07 58.9 95 38.9
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 3.1e-07 58.5 98 44.9
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 3.1e-07 58.5 89 41.6
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 4.1e-07 58.2 92 44.6
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.3e-07 57.8 92 43.5
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 6.9e-07 57.4 96 45.8
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.1e-07 57.0 38 68.4
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 9.1e-07 57.0 47 61.7
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 1.2e-06 56.6 96 38.5
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.5e-06 56.2 92 41.3
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.0e-06 55.8 43 58.1
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 2.0e-06 55.8 88 40.9
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 3.4e-06 55.1 99 48.5
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 3.4e-06 55.1 83 45.8
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 3.4e-06 55.1 42 64.3
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.5e-06 54.7 52 51.9
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.5e-06 54.7 96 37.5
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 7.7e-06 53.9 89 37.1
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 7.7e-06 53.9 92 42.4
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 7.7e-06 53.9 40 60.0


User provided reference genes

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